View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8343_high_4 (Length: 235)
Name: NF8343_high_4
Description: NF8343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8343_high_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 3747887 - 3747653
Alignment:
| Q |
1 |
gcaagcgacctaatcctccgactgaaacctactacaagttatataaaaccttccataaacgccagcaacgtagaactcttctccctccgagaatttcctt |
100 |
Q |
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| T |
3747887 |
gcaagcgacctaatcctctgactgaaacctactacaagttatataaaaccttccataaacgccagcaacgtagaactcttctccctccgagaatttcctt |
3747788 |
T |
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| Q |
101 |
tgatgatttggagtttttcattgacatttgggctgaagatatacttctcttctcggaatcggtgtctggctctgtcctgcaatccggttttagaagtcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3747787 |
tgatgatttggagtttttcattgacatttgggctgaagatattcttctcttctcggaagcggtgtctggctctgtcctgcaatcaggttttagaagtcca |
3747688 |
T |
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| Q |
201 |
gcttccggagtttgtgacttgctcaaatatcacct |
235 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
3747687 |
gcttctggagtttgtgacttgctcaaatatcacct |
3747653 |
T |
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