View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8343_low_11 (Length: 248)
Name: NF8343_low_11
Description: NF8343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8343_low_11 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 12416568 - 12416334
Alignment:
| Q |
10 |
gagatggacatcgcatccaatagttcttatgattatggtttcaaatccgagaatgtttcaaatgctaaccctacaactgtacggcagttggtgaaatttc |
109 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
12416568 |
gagatggacatagcatccaatagttcttattcttatgatttcaaatccgagaatgtttcaaatgcttaccctacaactgtacagcagttggtgaaatttc |
12416469 |
T |
|
| Q |
110 |
actattcagttatggcaaaaaaccaagtttctgaaagaattttacctacaattcctggaatatgaattgtctatgacttcacttttctgtgacctagttc |
209 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12416468 |
acttttcagctatggcaaaaaaccaagtttctgaaagaattttaactacaattcctggaatatgaattatctatgacttcacttttctgtgacctagttc |
12416369 |
T |
|
| Q |
210 |
cttgctgaagacttgttttatatatgttggtagttattt |
248 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12416368 |
cttgctgaagacttgttt----tatgttggtagttattt |
12416334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 12428628 - 12428394
Alignment:
| Q |
10 |
gagatggacatcgcatccaatagttcttatgattatggtttcaaatccgagaatgtttcaaatgctaaccctacaactgtacggcagttggtgaaatttc |
109 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
12428628 |
gagatggacatagcatccaatagttcttattcttatgatttcaaatccgagaatgtttcaaatgcttaccctacaactgtacagcagttggtgaaatttc |
12428529 |
T |
|
| Q |
110 |
actattcagttatggcaaaaaaccaagtttctgaaagaattttacctacaattcctggaatatgaattgtctatgacttcacttttctgtgacctagttc |
209 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12428528 |
acttttcagctatggcaaaaaaccaagtttctgaaagaattttaactacaattcctggaatatgaattatctatgacttcacttttctgtgacctagttc |
12428429 |
T |
|
| Q |
210 |
cttgctgaagacttgttttatatatgttggtagttattt |
248 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12428428 |
cttgctgaagacttgttt----tatgttggtagttattt |
12428394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University