View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8343_low_14 (Length: 228)
Name: NF8343_low_14
Description: NF8343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8343_low_14 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 12416038 - 12416270
Alignment:
| Q |
1 |
tcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactcc----atatatatcatgacatgatctagtgcgtt |
96 |
Q |
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| T |
12416038 |
tcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactccatagatatatatcatgacatgatctagtgcgtt |
12416137 |
T |
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| Q |
97 |
attaagacacattaggc--nnnnnnnntctgaaggatttgcttgcaagaaattaagacaggattagtacatatggcaactaaaattgaacaaagcagaag |
194 |
Q |
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| T |
12416138 |
attaagacacattaggcaaaacaaaaatctgaaagatttgcttgcaagaaattaagacaggattagtacatatggcaactaaaattgaacaaagcagaag |
12416237 |
T |
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| Q |
195 |
caaactgaaaaaacggaaacaagatcaccattct |
228 |
Q |
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| T |
12416238 |
caaactg-aaaaccggaaacaagatcaccattct |
12416270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 12428098 - 12428330
Alignment:
| Q |
1 |
tcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactcc----atatatatcatgacatgatctagtgcgtt |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12428098 |
tcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactccatagatatatatcatgacatgatctagtgcgtt |
12428197 |
T |
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| Q |
97 |
attaagacacattaggc--nnnnnnnntctgaaggatttgcttgcaagaaattaagacaggattagtacatatggcaactaaaattgaacaaagcagaag |
194 |
Q |
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| T |
12428198 |
attaagacacattaggcaaaacaaaaatctgaaagatttgcttgcaagaaattaagacaggattagtacatatggcaactaaaattgaacaaagcagaag |
12428297 |
T |
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| Q |
195 |
caaactgaaaaaacggaaacaagatcaccattct |
228 |
Q |
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| T |
12428298 |
caaactg-aaaaccggaaacaagatcaccattct |
12428330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 12402229 - 12402298
Alignment:
| Q |
7 |
aagatgttttacaaacaaaaaacagattttgacatg-----ctggtgagtcacaaacaaatactccatat |
71 |
Q |
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| T |
12402229 |
aagatgttttacaaacaacaaacagattttgacatgctggtctggtgagtcacaaacaaatactccatat |
12402298 |
T |
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