View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8343_low_15 (Length: 222)
Name: NF8343_low_15
Description: NF8343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8343_low_15 |
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| [»] scaffold1122 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 47 - 209
Target Start/End: Original strand, 12823258 - 12823421
Alignment:
| Q |
47 |
agtatatagaggaaaaaggaaagaaagcaaatgaacaagataacttgcagaacaagccaccttagttcactagttgctagcatagatttacttactatgc |
146 |
Q |
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|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12823258 |
agtatatagaggaagaaggaaagaaagcaaaggaacaagataacttgcagaacaagccaccttagttctctagttgctagcatagatttacttactatgc |
12823357 |
T |
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| Q |
147 |
aacttcagttttgtatatatagctattgtaaacacctttttcatc-ataagaatcatttctctg |
209 |
Q |
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| T |
12823358 |
accttcagttttgtatatatagcaattgtaaacacttttttcatcaataagaatcatttctctg |
12823421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 41 - 179
Target Start/End: Complemental strand, 16020195 - 16020056
Alignment:
| Q |
41 |
tatcatagtatatagaggaaaaaggaaagaaagcaaatgaacaagataacttgcagaacaagccaccttagttcactagttgctagcatagatttactta |
140 |
Q |
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||||| |||||||| ||||| |||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16020195 |
tatcagagtatataaaggaagaaggaaagaaagcaaaggaataagataacttgtagaacaagccaccttagttctctagttgctagcatagatttactta |
16020096 |
T |
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| Q |
141 |
ctatgcaacttc-agttttgtatatatagctattgtaaac |
179 |
Q |
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| T |
16020095 |
ctatgcaccttcaaattttgtatatatagcaattgtaaac |
16020056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1122 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: scaffold1122
Description:
Target: scaffold1122; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 47 - 209
Target Start/End: Complemental strand, 804 - 641
Alignment:
| Q |
47 |
agtatatagaggaaaaaggaaagaaagcaaatgaacaagataacttgcagaacaagccaccttagttcactagttgctagcatagatttacttactatgc |
146 |
Q |
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| T |
804 |
agtatatagaggaagaaggaaagaaagcaaaggaacaagataacttgcagaacaagccaccttaattctctagttgctagcatagatttacttactatgc |
705 |
T |
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| Q |
147 |
aacttcagttttgtatatatagctattgtaaacacctttttcatc-ataagaatcatttctctg |
209 |
Q |
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| T |
704 |
accttcagttttgtatatatagcaattgtaaacacttttttcatcaataagaatcatttctctg |
641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 45639240 - 45639410
Alignment:
| Q |
17 |
caatcagggcatcaattttctcact----atcatagtatatagaggaaaaaggaaagaaagcaaatgaacaagataacttgcagaacaagccaccttagt |
112 |
Q |
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||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
45639240 |
caatcagggcatcaactttctcactctctatcagagtatatagaggaaaaaggaaagaaagcaaaggaacaagataacttgcagaacaaaccaccttagt |
45639339 |
T |
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| Q |
113 |
tcactagttgctagcatagatttacttactatgcaacttcagttttgtatatatagctattgtaaacacctttttcatca |
192 |
Q |
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| T |
45639340 |
tctctagttgctag---------acttactatgcaccttcagttttgtatatatagctattgtaaacacctttttcatca |
45639410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 41 - 209
Target Start/End: Original strand, 35089688 - 35089847
Alignment:
| Q |
41 |
tatcatagtatatagaggaaaaaggaaagaaagcaaatgaacaagataacttgcagaacaagccaccttagttcactagttgctagcatagatttactta |
140 |
Q |
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| T |
35089688 |
tatcagagtatatagaggaagaaggaaagaaagcaaaggaataagataac---------aagccaccttagttctctagttgctagcatagatttacttg |
35089778 |
T |
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| Q |
141 |
ctatgcaacttcagttttgtatatatagctattgtaaacacctttttcatcataagaatcatttctctg |
209 |
Q |
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| T |
35089779 |
ctatgcaccttcagttttgtatatatagctattgttaacacctttttaataataagaatcatttctctg |
35089847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 34 - 209
Target Start/End: Original strand, 35084937 - 35085103
Alignment:
| Q |
34 |
ttctcactatcatagtatatagaggaaaaaggaaagaaagcaaatgaacaagataacttgcagaacaagccaccttagttcactagttgctagcatagat |
133 |
Q |
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|||| ||||||| |||||||||||||| |||||||||||||||| ||| |||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
35084937 |
ttctaactatcagagtatatagaggaagaaggaaagaaagcaaaggaataagataac---------aagccaccttagttctctagttgctagcatagat |
35085027 |
T |
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| Q |
134 |
ttacttactatgcaacttcagttttgtatatatagctattgtaaacacctttttcatcataagaatcatttctctg |
209 |
Q |
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||| || ||||||| ||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| |
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| T |
35085028 |
ttaattgctatgcaccttcagttttgtatatatagctattgttaacacctttttaataataagaatcatttctctg |
35085103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 16367347 - 16367225
Alignment:
| Q |
41 |
tatcatagtatatagaggaaaaaggaaagaaagcaaatgaacaagataacttgcagaacaagccaccttagttcactagttgctagcatagatttactta |
140 |
Q |
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||||| |||||||||||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
16367347 |
tatcagagtatatagaggaagaaggaaagaaagcaaaggaacaggataacttgtagaacaagccaccttagttcactagttgctagtatagatttactta |
16367248 |
T |
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| Q |
141 |
ctatgcaacttcagttttgtata |
163 |
Q |
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|||||| ||||| | ||||||| |
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| T |
16367247 |
ttatgcaccttcattcttgtata |
16367225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 27034020 - 27033897
Alignment:
| Q |
41 |
tatcatagtatatagaggaaaaaggaaagaaagcaaatgaa-caagataacttgcagaacaagccaccttagttcactagttgctagcatagatttactt |
139 |
Q |
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||||| ||||||||||| || ||||| |||| | ||||| | ||||||||||||||||||||||||||||||||| ||||| ||| | ||| ||||||| |
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| T |
27034020 |
tatcagagtatatagagaaagaaggatagaaggaaaatggatcaagataacttgcagaacaagccaccttagttctctagtagctggtgtaggtttactt |
27033921 |
T |
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| Q |
140 |
actatgcaacttcagttttgtata |
163 |
Q |
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|||||||| ||||| | ||||||| |
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| T |
27033920 |
actatgcaccttcattcttgtata |
27033897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 27038836 - 27038738
Alignment:
| Q |
65 |
gaaagaaagcaaatgaacaagataacttgcagaacaagccaccttagttcactagttgctagcatagatttacttactatgcaacttcagttttgtata |
163 |
Q |
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| T |
27038836 |
gaaagaaggaaaaggatcaagataacttgcagaacaagccaccttaattctctagtagctagtgtagttttacttactatgcaccttcattcttgtata |
27038738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 50335300 - 50335211
Alignment:
| Q |
120 |
ttgctagcatagatttacttactatgcaacttcagttttgtatatatagctattgtaaacacctttttcatc-ataagaatcatttctct |
208 |
Q |
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||||||| |||| ||||||||||||||| ||||| | ||||||||||| ||||||||||| |||||||| ||||||||||||||||| |
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| T |
50335300 |
ttgctagtatagttttacttactatgcaccttcattcttgtatatatatgaattgtaaacactcttttcatcaataagaatcatttctct |
50335211 |
T |
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