View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8343_low_2 (Length: 423)

Name: NF8343_low_2
Description: NF8343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8343_low_2
NF8343_low_2
[»] chr5 (4 HSPs)
chr5 (83-410)||(7392593-7392920)
chr5 (159-366)||(13954871-13955078)
chr5 (252-311)||(29685506-29685566)
chr5 (254-311)||(12566647-12566704)
[»] chr8 (1 HSPs)
chr8 (154-361)||(10248998-10249205)
[»] chr1 (8 HSPs)
chr1 (204-366)||(7856985-7857147)
chr1 (248-316)||(16146873-16146941)
chr1 (248-321)||(24658285-24658358)
chr1 (255-316)||(52277939-52278000)
chr1 (170-283)||(34774648-34774761)
chr1 (274-321)||(46815065-46815112)
chr1 (252-311)||(4391311-4391371)
chr1 (254-316)||(8327249-8327311)
[»] chr2 (4 HSPs)
chr2 (203-311)||(14107050-14107158)
chr2 (230-311)||(37771319-37771400)
chr2 (243-366)||(7873622-7873744)
chr2 (252-311)||(42049044-42049104)
[»] scaffold0063 (1 HSPs)
scaffold0063 (232-362)||(57453-57583)
[»] scaffold0050 (1 HSPs)
scaffold0050 (230-321)||(36173-36264)
[»] chr6 (1 HSPs)
chr6 (154-310)||(20702453-20702607)
[»] chr4 (4 HSPs)
chr4 (242-362)||(38640089-38640209)
chr4 (254-321)||(53814155-53814222)
chr4 (252-311)||(1798854-1798914)
chr4 (252-311)||(10388271-10388331)
[»] chr3 (5 HSPs)
chr3 (232-316)||(14193424-14193508)
chr3 (250-309)||(40024152-40024211)
chr3 (230-316)||(25647167-25647253)
chr3 (232-306)||(37122807-37122881)
chr3 (248-321)||(47235048-47235122)
[»] chr7 (3 HSPs)
chr7 (248-311)||(3477752-3477815)
chr7 (250-309)||(34389397-34389456)
chr7 (257-321)||(42533940-42534004)


Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 83 - 410
Target Start/End: Complemental strand, 7392920 - 7392593
Alignment:
Q  83 cgtttccggcggcggaagttgggtatgttgttggtgggtggtccggttagagtgagtgttggtagtgacggggtgatggtgacgaatgtgtggtgtgaag 182  Q
    ||||||||||||||||||||||||  | |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||     
T  7392920 cgtttccggcggcggaagttgggtcggctgttggtgggtggtccggttggagtgagtgttggtagtgacggggtggtggtgacgaatgtgtggtgtgaat 7392821  T
Q  183 ggggtgaattgtggagtcgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactccc 282  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7392820 ggggtgaattgtggagccgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactccc 7392721  T
Q  283 ggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgccggcggccatgggcttcagattttgcttgttttggtcccacgacgtcactat 382  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||| | || |||||||||||||||||||||||||||||||||||| ||||||||| |    
T  7392720 ggatcgtttgtcgtcgtaaggatcgtggtggttagggtttgtttacactggtggccatgggcttcagattttgcttgttttggtcccatgacgtcactgt 7392621  T
Q  383 gtgttccttatttttactattctgatgt 410  Q
    |||||||||||||||||||||| |||||    
T  7392620 gtgttccttatttttactattccgatgt 7392593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 159 - 366
Target Start/End: Complemental strand, 13955078 - 13954871
Alignment:
Q  159 tggtgacgaatgtgtggtgtgaagggggtgaattgtggagtcgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacga 258  Q
    |||||||| | |||| ||||| |||||||||  | |||  ||| |||||||  || ||||||||||| |  |||||||| || ||||| |||||||||||    
T  13955078 tggtgacggacgtgtcgtgtggagggggtgatgtatggtttcgataggtgttatctgtttccggtggctacaggtgtggcggcatctctttcattcacga 13954979  T
Q  259 ttaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgccggcggccatgggcttcagattttgctt 358  Q
    |||||||||| ||||| |||||||| |||||||||||| |||||||||||||| ||||||||||||| ||| ||| || | |||||||||||||||||||    
T  13954978 ttaatcctccttcaacaaactcccgaatcgtttgtcgttgtaaggatcgtggtggttggggtttgttcacgacggtggtcgtgggcttcagattttgctt 13954879  T
Q  359 gttttggt 366  Q
    | ||||||    
T  13954878 gatttggt 13954871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 29685506 - 29685566
Alignment:
Q  252 ttcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggt 311  Q
    ||||||||||||||||| ||  || |||||||| |||||| ||||||||||||||||||||    
T  29685506 ttcacgattaatcctccttcttcgcaactcccgaatcgttcgtcgtcgtaaggatcgtggt 29685566  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 12566647 - 12566704
Alignment:
Q  254 cacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggt 311  Q
    ||||||||||||||| || |||  ||||||||||||| |||||| || ||||||||||    
T  12566647 cacgattaatcctccttcgacgctctcccggatcgttcgtcgtcatatggatcgtggt 12566704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 154 - 361
Target Start/End: Complemental strand, 10249205 - 10248998
Alignment:
Q  154 ggtgatggtgacgaatgtgtggtgtgaagggggtgaattgtggagtcgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcatt 253  Q
    |||| |||||||| | |||||||||| |||||||||  ||||| | || |||||||| |||||||||| ||  |  || ||||| || ||||| ||||||    
T  10249205 ggtggtggtgacggacgtgtggtgtggagggggtgatgtgtggtgccgataggtgtggtccgtttccgatgactacagttgtggcggcatctctttcatt 10249106  T
Q  254 cacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgccggcggccatgggcttcagattt 353  Q
    ||||||||||||||| |||||||||||||  |||||||||  |||||||||||||||| |||||||||||||  | |||| ||   ||||||||||||||    
T  10249105 cacgattaatcctccttcaacgaactcccaaatcgtttgtgatcgtaaggatcgtggtggttggggtttgttcgcaccggtggttgtgggcttcagattt 10249006  T
Q  354 tgcttgtt 361  Q
    ||||||||    
T  10249005 tgcttgtt 10248998  T

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Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 204 - 366
Target Start/End: Original strand, 7856985 - 7857147
Alignment:
Q  204 aggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaagg 303  Q
    ||||||| | ||||||||||||  ||| |||||| || ||||| | |||||| |||||||||||| |||||||||| | |||||||||||||||||||||    
T  7856985 aggtgtggttcgtttccggtggccgtacgtgtggaggcatctcttccattcatgattaatcctccttcaacgaacttctggatcgtttgtcgtcgtaagg 7857084  T
Q  304 atcgtggttgttggggtttgtttacgccggcggccatgggcttcagattttgcttgttttggt 366  Q
    |||||| | |||| ||||||||   | ||| || | ||||||||||||| |||||||||||||    
T  7857085 atcgtgatggttgaggtttgttcgtgtcggtggtcgtgggcttcagattctgcttgttttggt 7857147  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 248 - 316
Target Start/End: Original strand, 16146873 - 16146941
Alignment:
Q  248 ttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttg 316  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||    
T  16146873 ttcatccacgattaatcctccttcaacgaactcccggatcgtttgtcgtcataaggatcgtggtggttg 16146941  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 24658285 - 24658358
Alignment:
Q  248 ttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 321  Q
    ||||| || |||||||||||| ||||||||||||||||| |||||| ||||||||||||||||| |||| ||||    
T  24658285 ttcatccatgattaatcctccttcaacgaactcccggattgtttgttgtcgtaaggatcgtggtggttgtggtt 24658358  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 316
Target Start/End: Original strand, 52277939 - 52278000
Alignment:
Q  255 acgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttg 316  Q
    |||||||||||||| |||||||||| | ||||||| ||||||||||||||||||||| ||||    
T  52277939 acgattaatcctccatcaacgaacttctggatcgtatgtcgtcgtaaggatcgtggtggttg 52278000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 283
Target Start/End: Original strand, 34774648 - 34774761
Alignment:
Q  170 gtgtggtgtgaagggggtgaattgtggagtcgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacgattaatcctccc 269  Q
    |||||||||| |||||||||   |||| | || |||||||| || ||||||||||| |  |||||||| |  ||||| ||||| |||||||||||||||     
T  34774648 gtgtggtgtggagggggtgataagtggtgccgataggtgtggtctgtttccggtggcttcaggtgtggcgacatctctttcatacacgattaatcctcct 34774747  T
Q  270 tcaacgaactcccg 283  Q
    | ||||||||||||    
T  34774748 ttaacgaactcccg 34774761  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 46815112 - 46815065
Alignment:
Q  274 cgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 321  Q
    |||||||||||||||||||| ||||||||||||||||| |||| ||||    
T  46815112 cgaactcccggatcgtttgttgtcgtaaggatcgtggtggttgtggtt 46815065  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 4391311 - 4391371
Alignment:
Q  252 ttcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggt 311  Q
    ||||||||||||||||| ||  || |||||| |||||||| ||||||||||||||||||||    
T  4391311 ttcacgattaatcctccttcttcgcaactcctggatcgttcgtcgtcgtaaggatcgtggt 4391371  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 8327311 - 8327249
Alignment:
Q  254 cacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttg 316  Q
    ||||||||||||||||||| ||  ||||||||||||| ||||||||  |||||| ||| ||||    
T  8327311 cacgattaatcctccctcatcgtgctcccggatcgttcgtcgtcgtttggatcggggtggttg 8327249  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 203 - 311
Target Start/End: Complemental strand, 14107158 - 14107050
Alignment:
Q  203 taggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaag 302  Q
    |||||||| ||||||||| | || || | ||||||||| ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  14107158 taggtgtgatccgtttccagcggctgcaagtgtggtggcatctctttcattcacgattaatcttccttcaacgaactcccggatcgtttgtcgtcgtaag 14107059  T
Q  303 gatcgtggt 311  Q
    |||| ||||    
T  14107058 gatcatggt 14107050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 37771400 - 37771319
Alignment:
Q  230 aggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggt 311  Q
    ||||||||||| ||||  |||| ||| |||||||||||  ||||||||||||||||||||||||||| ||||| ||||||||    
T  37771400 aggtgtggtggaatctttttcagtcatgattaatcctctttcaacgaactcccggatcgtttgtcgttgtaagaatcgtggt 37771319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 366
Target Start/End: Original strand, 7873622 - 7873744
Alignment:
Q  243 tctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgccggcggccatgg 342  Q
    |||| |||||| |||||||||||| | ||||||||||  ||||| |||||||||| ||||||||||||| |||| || ||||| ||| ||| |||| |||    
T  7873622 tctctttcatttacgattaatccttcttcaacgaactttcggatggtttgtcgtcataaggatcgtggtggttgtgg-ttgttcacg-cggtggccgtgg 7873719  T
Q  343 -gcttcagattttgcttgttttggt 366  Q
     |||| |||||||||||||||||||    
T  7873720 tgctttagattttgcttgttttggt 7873744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 42049104 - 42049044
Alignment:
Q  252 ttcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggt 311  Q
    ||||||||||||||||| ||  || |||| ||||||||||  |||||||||||||||||||    
T  42049104 ttcacgattaatcctccttcttcgtaacttccggatcgttcctcgtcgtaaggatcgtggt 42049044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 232 - 362
Target Start/End: Original strand, 57453 - 57583
Alignment:
Q  232 gtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgcc 331  Q
    |||||| | |||||| ||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| || |||||  |||     
T  57453 gtgtggcgatatctctttctttcacgattaatcctccttcaacaaactcccggatcgtttgtcgtcgtaaggatcgtggtggttgtgg-ttgttcgcgct 57551  T
Q  332 ggcggccatgg-gcttcagattttgcttgttt 362  Q
    || |||| ||| ||||| ||||||||||||||    
T  57552 ggtggccgtggtgcttcggattttgcttgttt 57583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 230 - 321
Target Start/End: Original strand, 36173 - 36264
Alignment:
Q  230 aggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 321  Q
    |||||||| |||||||| | |||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||| ||||    
T  36173 aggtgtggcggtatctcttccattcatgattaatcctccttcaacgaactcctggatcgtttgtcgtcgtaaggatcgtggtggttgtggtt 36264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 154 - 310
Target Start/End: Complemental strand, 20702607 - 20702453
Alignment:
Q  154 ggtgatggtgacgaatgtgtggtgtgaagggggtgaattgtggagtcgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcatt 253  Q
    |||| |||||||| | |||||||||||||||||  |  ||||| |||| || ||||| |||| |||||   | || ||||||||||| ||||  ||||||    
T  20702607 ggtggtggtgacggacgtgtggtgtgaaggggg--atgtgtggtgtcgatatgtgtgatccggttccgacagctgcaggtgtggtggcatctatttcatt 20702510  T
Q  254 cacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtgg 310  Q
    || |||||||||||| ||||||||||||||||||||||||  |||||||||||||||    
T  20702509 catgattaatcctccttcaacgaactcccggatcgtttgttatcgtaaggatcgtgg 20702453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 242 - 362
Target Start/End: Complemental strand, 38640209 - 38640089
Alignment:
Q  242 atctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgccggcggccatg 341  Q
    ||||| |||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| || |||||  |||||| || | ||    
T  38640209 atctctttcattcatgattaatcctccttcaacgaactcccgaatcgtttgtcgtcgtaaggatcgtggtggttgtgg-ttgttcgcgccggtgggcctg 38640111  T
Q  342 g-gcttcagattttgcttgttt 362  Q
    | ||||||| ||||||||||||    
T  38640110 gtgcttcagtttttgcttgttt 38640089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 321
Target Start/End: Complemental strand, 53814222 - 53814155
Alignment:
Q  254 cacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 321  Q
    ||||||| ||||||| |||||| |||| ||||| ||| |||||||||||||||||||| |||| ||||    
T  53814222 cacgattgatcctccttcaacgcactctcggattgttcgtcgtcgtaaggatcgtggtggttgtggtt 53814155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 1798854 - 1798914
Alignment:
Q  252 ttcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggt 311  Q
    ||||||||||||||||| ||  || ||||||||||||||| ||| ||||||||||||||||    
T  1798854 ttcacgattaatcctccttcttcgcaactcccggatcgttcgtcttcgtaaggatcgtggt 1798914  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 10388271 - 10388331
Alignment:
Q  252 ttcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggt 311  Q
    ||||| ||||||||||| ||  || ||||||||||||||| ||||||||||||||| ||||    
T  10388271 ttcacaattaatcctccttcttcgcaactcccggatcgttcgtcgtcgtaaggatcatggt 10388331  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 232 - 316
Target Start/End: Original strand, 14193424 - 14193508
Alignment:
Q  232 gtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttg 316  Q
    ||||||||||||||| | ||||||||||||||| | | |||||||  ||||||||||||||||||||||||||||||||| ||||    
T  14193424 gtgtggtggtatctcttccattcacgattaatcatacttcaacgagatcccggatcgtttgtcgtcgtaaggatcgtggtggttg 14193508  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 250 - 309
Target Start/End: Complemental strand, 40024211 - 40024152
Alignment:
Q  250 cattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtg 309  Q
    |||||| |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  40024211 cattcatgattaatcctccttcaacaaactctcggatcgtttgtcgtcgtaaggatcgtg 40024152  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 230 - 316
Target Start/End: Original strand, 25647167 - 25647253
Alignment:
Q  230 aggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttg 316  Q
    |||||||| | |||||| | |||||| |||||||| ||| |||||| |||||||||||||||||| ||||||||| |||||| ||||    
T  25647167 aggtgtggcgatatctcttccattcatgattaatcatccttcaacggactcccggatcgtttgtcatcgtaaggaccgtggtggttg 25647253  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 37122807 - 37122881
Alignment:
Q  232 gtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatc 306  Q
    ||||||||  ||||| |||||||| ||||||||||||   |||||||||||  ||||||||||||||||||||||    
T  37122807 gtgtggtgacatctctttcattcatgattaatcctcctggaacgaactcccatatcgtttgtcgtcgtaaggatc 37122881  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 47235048 - 47235122
Alignment:
Q  248 ttcattcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 321  Q
    ||||| ||||||||||||||| |||||| ||||| ||| ||||| || || |||||||||||||| |||| ||||    
T  47235048 ttcatccacgattaatcctccttcaacgcaactctcgggtcgttcgttgttgtaaggatcgtggtggttgtggtt 47235122  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 3477752 - 3477815
Alignment:
Q  248 ttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggt 311  Q
    |||||| |||||||||||||| |||||||||||| || ||||||||| ||||||||||||||||    
T  3477752 ttcatttacgattaatcctccttcaacgaactcctggctcgtttgtcatcgtaaggatcgtggt 3477815  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 250 - 309
Target Start/End: Original strand, 34389397 - 34389456
Alignment:
Q  250 cattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtg 309  Q
    |||||| |||||||||||| ||||| |||| |||||||||||||||||||||||||||||    
T  34389397 cattcatgattaatcctccttcaacaaacttccggatcgtttgtcgtcgtaaggatcgtg 34389456  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 42534004 - 42533940
Alignment:
Q  257 gattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 321  Q
    |||||||||||  |||||||||| ||| ||||||||||||||||||||||||||| |||| ||||    
T  42534004 gattaatcctctttcaacgaacttccgaatcgtttgtcgtcgtaaggatcgtggtggttgtggtt 42533940  T

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