View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8343_low_4 (Length: 346)
Name: NF8343_low_4
Description: NF8343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8343_low_4 |
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| [»] scaffold0204 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 37071456 - 37071133
Alignment:
| Q |
17 |
tgctgcaaaaacaatagtaacacctgccattccaagaatttgaaccccatctccaaccattacacacagaagctttgagcattcaggctccctaaataca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37071456 |
tgctgcaaaaacaatagtaacacctgccattccaagaatttgaaccccatctccaaccattacacacagaagctttgagcattcaggctccctaaataca |
37071357 |
T |
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| Q |
117 |
tcacctacaacaagtttccacccagaaagctcctcgttcatctgagcttgtgcctctttgtccaattcctcataccttgtcaaatcccttcttacagttc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37071356 |
tcacctacaacaagtttccacccagaaagctcctcgttcatctgagcttgtgcctctttgtccaattcctcataccttgtcaaatcccttcttacagttc |
37071257 |
T |
|
| Q |
217 |
ttaagaaaatgacaaaaacaatgccagcaaggaaaataataaccatcagtgaatttaggattgagaaccaatgaactcgagaaccctccatcttcaaata |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37071256 |
ttaagaaaatgacaaaaacaatgccagcaaggaaaataataaccatcagtgaatttaggattgagaaccaatgaactcgagaaccctccatcttcaaata |
37071157 |
T |
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| Q |
317 |
agcatcccaacgtgatgtccatct |
340 |
Q |
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||||||||||||||||| |||||| |
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| T |
37071156 |
agcatcccaacgtgatggccatct |
37071133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 9e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 18 - 328
Target Start/End: Original strand, 43219315 - 43219625
Alignment:
| Q |
18 |
gctgcaaaaacaatagtaacacctgccattccaagaatttgaaccccatctccaaccattacacacagaagctttgagcattcaggctccctaaatacat |
117 |
Q |
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| T |
43219315 |
gctgcgaacacaattgtaacaccagccatgccaagaatctgaaccccgtctccaaccatcacacaaaggagttttgagcaacctggttccctaaatacat |
43219414 |
T |
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| Q |
118 |
cacctacaacaagtttccacccagaaagctcctcgttcatctgagcttgtgcctctttgtccaattcctcataccttgtcaaatcccttcttacagttct |
217 |
Q |
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|||| |||||||| ||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| |||||||| || ||||| |
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| T |
43219415 |
cacccacaacaagcttccatccagaaagctcctcattcatctgagcttgtgtctctttgtccaattcctcataccttgccaagtcccttctcactgttct |
43219514 |
T |
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| Q |
218 |
taagaaaatgacaaaaacaatgccagcaaggaaaataataaccatcagtgaatttaggattgagaaccaatgaactcgagaaccctccatcttcaaataa |
317 |
Q |
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||||||||||||||||||||| ||||| || |||| || ||||||||||||||||| || ||||||||||| || || ||||||||||||||||||||| |
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| T |
43219515 |
taagaaaatgacaaaaacaataccagctagaaaaaagatcaccatcagtgaatttagaatcgagaaccaatgcacccgggaaccctccatcttcaaataa |
43219614 |
T |
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| Q |
318 |
gcatcccaacg |
328 |
Q |
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||||||||||| |
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| T |
43219615 |
gcatcccaacg |
43219625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 325
Target Start/End: Complemental strand, 421 - 222
Alignment:
| Q |
126 |
acaagtttccacccagaaagctcctcgttcatctgagcttgtgcctctttgtccaattcctcataccttgtcaaatcccttcttacagttcttaagaaaa |
225 |
Q |
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||||| ||||| ||||| | |||||| |||||||| ||||| || || || || | ||||| || || | || |||||| || |||||||| ||||| | |
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| T |
421 |
acaagcttccaaccagataactcctcattcatctgtgcttgagcttccttatcaagctcctcgtaactggccagatccctcctaacagttctcaagaaga |
322 |
T |
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| Q |
226 |
tgacaaaaacaatgccagcaaggaaaataataaccatcagtgaatttaggattgagaaccaatgaactcgagaaccctccatcttcaaataagcatccca |
325 |
Q |
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| |||| |||||| |||||||||||| | || ||||||| ||||| ||||| ||||||||||| ||| | |||||||||||||| ||||||||||| |
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| T |
321 |
taacaagaacaataccagcaaggaaagtgatcaccatcaacgaattgaggatcgagaaccaatggactttggctccctccatcttcaagtaagcatccca |
222 |
T |
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