View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8343_low_5 (Length: 320)
Name: NF8343_low_5
Description: NF8343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8343_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 21 - 296
Target Start/End: Original strand, 31383219 - 31383487
Alignment:
| Q |
21 |
catacctctccacaacaacctctatcaaaacttcaaccaccaaagtcaaacaaaaacctcgctagttaggattggcaaccctaaaacgaatctacaacac |
120 |
Q |
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| T |
31383219 |
catacctctccacaacaacctcaatcaaaacttcaaccaccaaagtcaaacaaaaacctcgcaagttaggattggcaaccctaagacgaatctacaacac |
31383318 |
T |
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| Q |
121 |
ttaggcatgacttcaattataacaataaaacaaggtatgaaggcggcaacaccaccc-atacctaaacaaatccaatcctctcgcacagaggagccaatt |
219 |
Q |
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| T |
31383319 |
ctagtcatgacttcagtta--------aaacaaggtatgaaggcggcaacaccaccccatacctaaacaaatccaatcctctcgcacagaggagccaatt |
31383410 |
T |
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| Q |
220 |
ttgaaacatgcaggcacaatagatgtagcgacgaaaaaccatcaaccatttagaaaaactctatatccaacacgaaa |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31383411 |
ttgaaacatgcaggcacaatagatgtagcgacgaaaaaccatcaaccatttagaaaaactctatatccaacacgaaa |
31383487 |
T |
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