View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8343_low_6 (Length: 308)
Name: NF8343_low_6
Description: NF8343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8343_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 36893111 - 36893400
Alignment:
| Q |
16 |
acatcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaaggtcttataaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893111 |
acatcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaaggtcttataaa |
36893210 |
T |
|
| Q |
116 |
agacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgctgtacctggc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893211 |
agacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgctgtacctggc |
36893310 |
T |
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| Q |
216 |
ggcacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctttgccatttcttcacttattggtctctgctactcc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
36893311 |
ggcacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctttgccatttcttcacttatcggtctctgcttctcc |
36893400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 36883110 - 36883392
Alignment:
| Q |
18 |
atcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaaggtcttataaaag |
117 |
Q |
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|||||||||||||| |||||||||||| || |||| ||||| || |||||||||||||| ||||||||||||| ||||||| || ||||||| ||| |
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| T |
36883110 |
atcaaaagccttgtaccacaacacttctactttagaagcaacaacaagggcaaaacatcaagtgaaattttcaagacaacacacgaaaatcttatacaag |
36883209 |
T |
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| Q |
118 |
acagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgctgtacctggcgg |
217 |
Q |
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| T |
36883210 |
agagcagcagttggctaaaagacacgtcagaatcctgctccgtcgtatctggccttgtagccggtgtttcctttgccacagcaagccaagtacctggcgg |
36883309 |
T |
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| Q |
218 |
cacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctttgccatttcttcacttattggtctctgct |
300 |
Q |
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|||||| ||| |||| || || ||||||||||||||||||||||| || | ||||||||||||||||||||| ||||| |||| |
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| T |
36883310 |
cacaaccgatgaaggcagtccagtattagaaggcaagcctgcatttgacgcctttgccatttcttcacttatcggtctttgct |
36883392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 36902918 - 36903168
Alignment:
| Q |
18 |
atcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaaggtcttataaaag |
117 |
Q |
| |
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|||||||||||||||||| ||||||| ||| | || ||||| || ||||||||| | | | || |||||| || |||| ||||||||||||||| |
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| T |
36902918 |
atcaaaagccttgtgccagaacacttacatttgacaagcaacaacaaaggcaaaacagctgaaaatatcttcaaggaatcacatgaaggtcttataaaag |
36903017 |
T |
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| Q |
118 |
acagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgctgtacctggcgg |
217 |
Q |
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|||| | |||||||||||| ||||| | || |||||||| |||||| | || ||||| ||||||| |||||| ||||| |||| || ||||||||||| |
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| T |
36903018 |
acagcaatgaatggctaaaaaacacagcagattcctgctcggttgtagccgcgcttgtcgctggtgcttccttcaccacaacaagtgcagtacctggcgg |
36903117 |
T |
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| Q |
218 |
cacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctt |
271 |
Q |
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||||||| | |||||||| |||||||||||||| ||||||||| ||||||| |
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| T |
36903118 |
aacaactg---agggtagaccagtattagaaggcaatcctgcattcaatgtctt |
36903168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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