View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8344_high_2 (Length: 439)
Name: NF8344_high_2
Description: NF8344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8344_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 20 - 435
Target Start/End: Original strand, 36885704 - 36886117
Alignment:
| Q |
20 |
ttacagtctagcaaggtttgtcaaggaaccaaatgatcttggtagatctcctgagaagatattgtatgaaaggtccctgaagaaaggaaatcaccctttg |
119 |
Q |
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| T |
36885704 |
ttacagtctggcaaggtttgtcaaggaaccaaatgatcttggtagatctcctgagaagttattgtacgaaatgtccctgaagaaaggaaatcacccgttg |
36885803 |
T |
|
| Q |
120 |
tgaggttccatttaatgaaatttgaacataacggccagagcatctgcattttgttaatatcattttctcaaaacctagtcagatccaattttcattacac |
219 |
Q |
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|||||||||||||||||||||||||||| ||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36885804 |
tgaggttccatttaatgaaatttgaacaaaacagtcagagcatctgcattttgtgaatatcattttctcaaaacctagtcagatccaattttcattacac |
36885903 |
T |
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| Q |
220 |
agtcttatcacatccctttaaatcagtgaaacatacaaaatattatatttttataatcgatgccttgctcagttgcttttcaacttttttgtgtctttaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| || |
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| T |
36885904 |
agtcttatcacatccctttaaatcagtgaaacatacaaaatattatatttttataatcgatgcctttctcaggtgcttttcaac--ttttgtgtcttcaa |
36886001 |
T |
|
| Q |
320 |
ctaaatatagcattaatgaggagtacatatctatgttttggttttattaagattgatttgaatgattttcgttaatatattaaagttcatatagttttaa |
419 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| || |||||||||||| |
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| T |
36886002 |
taaaatatagcaataaagaggagtacatatctatgttttggttttattaattttgatttgaatgatttactttaatatattaaattttatatagttttaa |
36886101 |
T |
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| Q |
420 |
tgttacacatattatt |
435 |
Q |
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|||| ||||||||||| |
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| T |
36886102 |
tgttgcacatattatt |
36886117 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 22556200 - 22556284
Alignment:
| Q |
20 |
ttacagtctagcaaggtttgtcaaggaaccaaatgatcttggtagatctcctgagaagatattgtatgaaaggtccctgaagaaa |
104 |
Q |
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||||| |||| |||||||| |||||||||||||||| ||||| |||||||| | ||| |||| || ||||||||||||| |||| |
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| T |
22556200 |
ttacaatctatcaaggtttatcaaggaaccaaatgaacttggcagatctccagtgaaattattataagaaaggtccctgatgaaa |
22556284 |
T |
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