View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8344_high_3 (Length: 344)
Name: NF8344_high_3
Description: NF8344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8344_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 37460997 - 37460673
Alignment:
| Q |
1 |
ttgagcattaacaatcccaggaggtaatctttctgcacctctaggatttgttggaacccaaatctgcaaacaatcaccaaagcaagtggcaattttctga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37460997 |
ttgagcattaacaatcccaggaggtaatctttctgcacctctaggatttgttggaacccaaatctgcaaacaatcaccaaagcaagtggcaattttctga |
37460898 |
T |
|
| Q |
101 |
ttattacataagacgagagtcatgcttcaaatccttttaacaataactgattgatacagagacaggtgtttaattattatactgagctaaaaaatggggg |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37460897 |
ttattacataagacgagagtcatggttcaaatccttttaacaataactgattgatacatagacaggtgtttaattattatactgagctaaaaaatggggg |
37460798 |
T |
|
| Q |
201 |
taaaacaacgttttaaattgccgttcgcaatctcatttgtgaccataagatcatcaattttgagacctctgagactgcatcaactgcatttgtctatagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37460797 |
taaaacaacgttttaaattgccgttcgcaatctcatttgtgaccataagatcgtcaattttgagacctctgagactgcatcaactgcatttgtctataat |
37460698 |
T |
|
| Q |
301 |
ttttcgcaatactaatcctttgttc |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
37460697 |
ttttcgcaatactaatcctttgttc |
37460673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 37455017 - 37454966
Alignment:
| Q |
18 |
caggaggtaatctttctgcacctctaggatttgttggaacccaaatctgcaa |
69 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
37455017 |
caggaggtaatctttctgcacctcttggatttgatggaacccaaatctgcaa |
37454966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University