View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8344_high_5 (Length: 285)

Name: NF8344_high_5
Description: NF8344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8344_high_5
NF8344_high_5
[»] chr5 (5 HSPs)
chr5 (1-272)||(10298247-10298518)
chr5 (24-99)||(9747143-9747218)
chr5 (109-181)||(9747249-9747320)
chr5 (1-60)||(10290202-10290261)
chr5 (201-272)||(10290129-10290200)
[»] chr2 (3 HSPs)
chr2 (160-230)||(16021964-16022034)
chr2 (106-188)||(14117731-14117814)
chr2 (47-99)||(33599016-33599068)
[»] chr4 (2 HSPs)
chr4 (137-223)||(51978594-51978683)
chr4 (165-224)||(3929573-3929630)
[»] chr1 (3 HSPs)
chr1 (45-96)||(36033560-36033611)
chr1 (165-214)||(16119091-16119140)
chr1 (126-215)||(21623678-21623767)
[»] chr7 (2 HSPs)
chr7 (45-95)||(48522878-48522928)
chr7 (45-97)||(46392597-46392649)
[»] scaffold0187 (1 HSPs)
scaffold0187 (45-98)||(4567-4620)
[»] scaffold0062 (1 HSPs)
scaffold0062 (59-99)||(332-372)
[»] chr8 (1 HSPs)
chr8 (174-222)||(9706796-9706844)


Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 10298518 - 10298247
Alignment:
Q  1 cctcattcctttttaagtgtcgcttctgcacaagaattctttcatatttatttgttgtttttaaattttaatgcaacattaactattattttgtcaatat 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10298518 cctcattcctttttaagtgtcgcttctgcagaagaattctttcatatttatttgttgtttttaaattttaatgcaacattaactattattttgtcaatat 10298419  T
Q  101 tgcaaagagataagtagatagaacaagataataaaaagttaagggtataatagaaaaagaaatgatttcatcaaaagtaacgaaatttactagttttctt 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10298418 tgcaaagggataagtagatagaacaagataataaaaagttaagggtataatagaaaaagaaatgatttcatcaaaagtaacgaaatttactagttttctt 10298319  T
Q  201 attatgtgtaaataatcttaaaacgacaataagaaggaacggacggaatatttttacctgttgactatgatg 272  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  10298318 attatgtgtaaataatattaaaacaacaataagaaggaacggacggagtatttttacctgttgactatgatg 10298247  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 9747143 - 9747218
Alignment:
Q  24 ttctgcacaagaattctttcatatttatttgttgtttttaaattttaatgcaacattaactattattttgtcaata 99  Q
    ||||||| |||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9747143 ttctgcagaagaattcgttcatacttatttgtcgtttttaaattttaatgcaacattaactattattttgtcaata 9747218  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 9747249 - 9747320
Alignment:
Q  109 gataagtagatagaacaagataataaaaagttaagggtataatagaaaaagaaatgatttcatcaaaagtaac 181  Q
    ||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||    
T  9747249 gataaatagatggaacaagataataaaaa-ttaagggtattatagaaaaagaaataatttcatcaaaagtaac 9747320  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 10290261 - 10290202
Alignment:
Q  1 cctcattcctttttaagtgtcgcttctgcacaagaattctttcatatttatttgttgttt 60  Q
    |||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||    
T  10290261 cctcattcctttttaaatgtcgcttctgcataagaattcgttcatatttatttgttgttt 10290202  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 10290200 - 10290129
Alignment:
Q  201 attatgtgtaaataatcttaaaacgacaataagaaggaacggacggaatatttttacctgttgactatgatg 272  Q
    |||||||||||||||| ||||||||| ||||| |||||||| ||| | ||||||| ||||||||| ||||||    
T  10290200 attatgtgtaaataattttaaaacgaaaataaaaaggaacgaacgtactatttttgcctgttgaccatgatg 10290129  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 16021964 - 16022034
Alignment:
Q  160 aaatgatttcatcaaaagtaacgaaatttactagttttcttattatgtgtaaataatcttaaaacgacaat 230  Q
    |||| ||| ||| ||||||||| ||||||| | ||||||| | ||||||||||||||||||||||||||||    
T  16021964 aaataattccataaaaagtaacaaaatttattggttttctcagtatgtgtaaataatcttaaaacgacaat 16022034  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 188
Target Start/End: Original strand, 14117731 - 14117814
Alignment:
Q  106 agagataagtagatagaacaagataataaaaagttaagggtataatag-aaaaagaaatgatttcatcaaaagtaacgaaattt 188  Q
    |||||||| |||||  || ||||||||||| | ||||| |||| |||| ||||||| || ||||||||||||||||| ||||||    
T  14117731 agagataaatagatgaaataagataataaatacttaagagtattataggaaaaagacataatttcatcaaaagtaacaaaattt 14117814  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 33599068 - 33599016
Alignment:
Q  47 tttatttgttgtttttaaattttaatgcaacattaactattattttgtcaata 99  Q
    ||||||| || |||| ||| |||||||||||||||||  ||||||||||||||    
T  33599068 tttatttattattttcaaagtttaatgcaacattaaccgttattttgtcaata 33599016  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 51978683 - 51978594
Alignment:
Q  137 agttaagggtataatagaaaaag---aaatgatttcatcaaaagtaacgaaatttactagttttcttattatgtgtaaataatcttaaaa 223  Q
    |||||||||||| |||||||||    |||| ||  ||||||||||||| ||||||| ||||||||| | ||||||| |||||||||||||    
T  51978683 agttaagggtattatagaaaaatgacaaataataccatcaaaagtaacaaaatttattagttttctaagtatgtgtcaataatcttaaaa 51978594  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 3929630 - 3929573
Alignment:
Q  165 atttcatcaaaagtaacgaaatttactagttttcttattatgtgtaaataatcttaaaac 224  Q
    |||||||||||| |||| ||||||| | |||||||||  |||||||||||| ||||||||    
T  3929630 atttcatcaaaaataacaaaatttattggttttctta--atgtgtaaataaacttaaaac 3929573  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 36033560 - 36033611
Alignment:
Q  45 tatttatttgttgtttttaaattttaatgcaacattaactattattttgtca 96  Q
    ||||||||| |||||||| || |||||| ||| |||||||||||||||||||    
T  36033560 tatttatttattgttttttaaatttaattcaatattaactattattttgtca 36033611  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 16119091 - 16119140
Alignment:
Q  165 atttcatcaaaagtaacgaaatttactagttttcttattatgtgtaaata 214  Q
    ||||||||||||||||| ||||||| |  ||||||| |||||||||||||    
T  16119091 atttcatcaaaagtaacaaaatttaatgtttttcttgttatgtgtaaata 16119140  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 21623678 - 21623767
Alignment:
Q  126 agataataaaaagttaagggtataatagaaaaagaaatgatttcatcaaaagtaacgaaatttactagttttcttattatgtgtaaataa 215  Q
    |||||||||| | |||||||||| | ||||||||| |   |||||||||||||||| |||||||   ||||||||  | |||||||||||    
T  21623678 agataataaatatttaagggtattaaagaaaaagacacactttcatcaaaagtaacaaaatttatcggttttcttggtttgtgtaaataa 21623767  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 48522878 - 48522928
Alignment:
Q  45 tatttatttgttgtttttaaattttaatgcaacattaactattattttgtc 95  Q
    ||||||||| |  |||||||| |||||||||||||||| ||||||||||||    
T  48522878 tatttatttatcatttttaaagtttaatgcaacattaattattattttgtc 48522928  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 46392649 - 46392597
Alignment:
Q  45 tatttatttgttgtttttaaattttaatgcaacattaactattattttgtcaa 97  Q
    ||||||||||| ||||| ||| || ||||||||||||||||  ||||||||||    
T  46392649 tatttatttgtcgttttcaaagttcaatgcaacattaactaggattttgtcaa 46392597  T

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Target: scaffold0187 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 4620 - 4567
Alignment:
Q  45 tatttatttgttgtttttaaattttaatgcaacattaactattattttgtcaat 98  Q
    |||||| |||||||||||||| ||| ||| ||||||||||||||| ||| ||||    
T  4620 tatttaattgttgtttttaaagttttatgtaacattaactattatcttgacaat 4567  T

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Target: scaffold0062 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 332 - 372
Alignment:
Q  59 ttttaaattttaatgcaacattaactattattttgtcaata 99  Q
    |||||||||||||||||||||||| |||| | |||||||||    
T  332 ttttaaattttaatgcaacattaattattgtcttgtcaata 372  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 9706796 - 9706844
Alignment:
Q  174 aaagtaacgaaatttactagttttcttattatgtgtaaataatcttaaa 222  Q
    |||||||||||||||| | ||||||||  ||||||||||||| ||||||    
T  9706796 aaagtaacgaaatttattggttttcttggtatgtgtaaataaccttaaa 9706844  T

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