View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8344_low_1 (Length: 721)

Name: NF8344_low_1
Description: NF8344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8344_low_1
NF8344_low_1
[»] chr1 (1 HSPs)
chr1 (20-706)||(747383-748069)


Alignment Details
Target: chr1 (Bit Score: 635; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 20 - 706
Target Start/End: Original strand, 747383 - 748069
Alignment:
Q  20 tcactcattcccattaatcttctcttgttctgtatcggcacaccagtaaaatcattatctccactcgcggaaaatatcgcgagcgaattactcacgagtt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  747383 tcactcattcccattaatcttctcttgttctgtatcggcacaccagtaaaatcattatctccactcgcggaaaatatcgcgagggaattactcacgagtt 747482  T
Q  120 ccgacaagtcttttaagttaccaaccatctgatccttaacggtaccgcttgtgtcttcaaagccttctagacatgtgtcttggtttgttaacgcggcact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  747483 ccgacaagtcttttaagttaccaaccatctgatccttaacggtaccgcttgtgtcttcaaagccttctagacatgtgtcttggtttgttaacgcggcact 747582  T
Q  220 gagccatgtcatcacatcctcggttgatccagcgacattggagaattgtcttgattctccgtcgtcgttggataaagttgaggacgtggtcatgagagaa 319  Q
    |||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  747583 gagccaagtcatcacgtcctcagttgatccagcgacattggagaattgtcttgattcaccgtcgtcgttggataaagttgaggacgtggtcatgagagag 747682  T
Q  320 tccatggatgatctgatagcatccatggactcgtccattagttcaagacaatcctcgtatgcagcacgaactcgtgggttcgcgactgtatacgagagac 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  747683 tccatggatgatctgatagcatccatggactcgtccattagttcaagacaatcctcgtatgcagcacgaactcgtgggttcgcgactgtatatgagagac 747782  T
Q  420 ctgaggaggcgaagagtgctttgctgatatgacgatgtgtcatattgaatgagatatgaacaagttcttgctcagaagctgaggttgagccagggaaatc 519  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  747783 ctgaggaggcgaagagtgctttgctgatgtgacggtgtgtcatattgaatgagatatgaactagttcttgctcagaagctgaggttgagccagggaaatc 747882  T
Q  520 taagagagagtttatacaaagtgaagggtatctagttttgctgcaggttctggagattgcttgagttggtttggaatggagaaggtttgaattgttggat 619  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  747883 taagagagagtttatacaaagtgaagggtatctagttttgctgcaggttcgggagattgcttgagttggtttggaatggagaaggtttgaattgttggat 747982  T
Q  620 gaagcacgagaccggaccacggtgatcagtgcagccgagatggcggaagcaatgatcaagacggcggcgaggatggacagtatgatg 706  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  747983 gaagcacgagaccggaccacggtgatcagtgcagccgagatggcggaagcgatgatcaagacggcggcgaggatggacagcatgatg 748069  T

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