View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8344_low_13 (Length: 258)

Name: NF8344_low_13
Description: NF8344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8344_low_13
NF8344_low_13
[»] chr5 (37 HSPs)
chr5 (95-206)||(10298553-10298664)
chr5 (95-225)||(8419992-8420117)
chr5 (132-205)||(21351906-21351979)
chr5 (120-204)||(31084309-31084393)
chr5 (132-197)||(42893353-42893418)
chr5 (132-203)||(6247609-6247680)
chr5 (132-206)||(21191057-21191131)
chr5 (137-206)||(14674253-14674322)
chr5 (138-195)||(15405062-15405119)
chr5 (103-206)||(13287366-13287474)
chr5 (138-206)||(39698525-39698593)
chr5 (146-204)||(41995457-41995515)
chr5 (132-189)||(21576746-21576803)
chr5 (132-197)||(33178018-33178083)
chr5 (125-197)||(41633728-41633800)
chr5 (121-195)||(5894823-5894897)
chr5 (132-206)||(21522734-21522808)
chr5 (132-206)||(21533300-21533374)
chr5 (132-197)||(30135306-30135372)
chr5 (132-193)||(7677702-7677763)
chr5 (222-255)||(10298523-10298556)
chr5 (148-217)||(17925189-17925258)
chr5 (132-192)||(21542028-21542088)
chr5 (132-219)||(3966474-3966561)
chr5 (95-126)||(3966597-3966628)
chr5 (139-206)||(4105241-4105310)
chr5 (137-191)||(12159951-12160005)
chr5 (157-195)||(18316951-18316989)
chr5 (132-206)||(19579685-19579759)
chr5 (137-203)||(24906307-24906373)
chr5 (132-206)||(37328845-37328919)
chr5 (137-206)||(17177029-17177098)
chr5 (146-215)||(30098301-30098370)
chr5 (158-206)||(6770527-6770575)
chr5 (158-206)||(19552570-19552618)
chr5 (132-192)||(30183547-30183607)
chr5 (139-183)||(43001807-43001851)
[»] chr6 (35 HSPs)
chr6 (1-86)||(1694309-1694394)
chr6 (132-225)||(7801157-7801250)
chr6 (95-206)||(426483-426589)
chr6 (120-239)||(12696277-12696394)
chr6 (132-239)||(28715243-28715353)
chr6 (137-203)||(1681745-1681811)
chr6 (95-197)||(2117069-2117170)
chr6 (132-206)||(9107371-9107445)
chr6 (132-206)||(15489733-15489807)
chr6 (132-206)||(34595118-34595192)
chr6 (132-205)||(10770675-10770748)
chr6 (132-205)||(16766682-16766755)
chr6 (139-239)||(8776981-8777086)
chr6 (137-204)||(16833294-16833361)
chr6 (132-206)||(8365520-8365594)
chr6 (132-203)||(17302543-17302615)
chr6 (95-205)||(7938101-7938214)
chr6 (140-206)||(17841598-17841664)
chr6 (132-206)||(28152083-28152156)
chr6 (137-203)||(31959146-31959212)
chr6 (132-197)||(853860-853925)
chr6 (132-197)||(7977831-7977896)
chr6 (138-187)||(31384923-31384972)
chr6 (137-192)||(1191706-1191761)
chr6 (132-197)||(4877935-4878001)
chr6 (132-225)||(7027206-7027300)
chr6 (139-182)||(4118341-4118384)
chr6 (146-225)||(34225824-34225906)
chr6 (132-206)||(3398603-3398676)
chr6 (132-206)||(7930289-7930363)
chr6 (137-183)||(9522898-9522944)
chr6 (132-197)||(33001290-33001355)
chr6 (143-191)||(5970120-5970168)
chr6 (146-190)||(24115862-24115906)
chr6 (137-197)||(30866150-30866210)
[»] chr7 (35 HSPs)
chr7 (125-217)||(9408328-9408420)
chr7 (138-203)||(35861951-35862016)
chr7 (132-196)||(3991318-3991382)
chr7 (132-206)||(11061077-11061151)
chr7 (132-206)||(18215187-18215261)
chr7 (137-239)||(24105631-24105731)
chr7 (121-206)||(13770675-13770760)
chr7 (132-197)||(24339635-24339700)
chr7 (132-192)||(7438704-7438764)
chr7 (121-225)||(9778462-9778569)
chr7 (139-197)||(25481895-25481953)
chr7 (132-206)||(27945025-27945099)
chr7 (120-205)||(5409825-5409910)
chr7 (140-197)||(8234139-8234196)
chr7 (120-203)||(32094009-32094093)
chr7 (132-239)||(43027470-43027576)
chr7 (132-219)||(11665441-11665528)
chr7 (132-203)||(33994199-33994270)
chr7 (141-219)||(11831404-11831481)
chr7 (137-183)||(26033467-26033513)
chr7 (132-197)||(7197298-7197363)
chr7 (132-204)||(6630913-6630985)
chr7 (125-197)||(25822648-25822720)
chr7 (95-126)||(1433542-1433573)
chr7 (132-192)||(11272587-11272649)
chr7 (158-204)||(29763201-29763247)
chr7 (136-206)||(43249977-43250047)
chr7 (95-124)||(18035810-18035839)
chr7 (159-204)||(21826259-21826304)
chr7 (139-187)||(7058429-7058477)
chr7 (158-206)||(10042921-10042969)
chr7 (125-204)||(21560484-21560568)
chr7 (146-206)||(29787384-29787444)
chr7 (137-197)||(40287363-40287422)
chr7 (132-176)||(48438560-48438604)
[»] chr1 (49 HSPs)
chr1 (138-212)||(32434723-32434798)
chr1 (132-239)||(38078662-38078769)
chr1 (132-219)||(37598803-37598889)
chr1 (132-204)||(22881617-22881689)
chr1 (132-215)||(31672896-31672979)
chr1 (132-195)||(40258934-40258997)
chr1 (132-206)||(1704993-1705067)
chr1 (132-190)||(24577187-24577245)
chr1 (95-206)||(48450555-48450662)
chr1 (126-190)||(28273083-28273147)
chr1 (131-206)||(1815241-1815316)
chr1 (132-219)||(46348384-46348470)
chr1 (139-197)||(113292-113350)
chr1 (120-190)||(1486698-1486768)
chr1 (141-219)||(18556466-18556543)
chr1 (95-224)||(24334669-24334799)
chr1 (139-197)||(32461471-32461529)
chr1 (132-206)||(42359450-42359524)
chr1 (146-239)||(398780-398878)
chr1 (94-239)||(3490351-3490497)
chr1 (137-197)||(21378571-21378631)
chr1 (132-204)||(47989484-47989555)
chr1 (132-195)||(6332666-6332728)
chr1 (132-190)||(18190109-18190167)
chr1 (132-190)||(22515888-22515946)
chr1 (132-181)||(18337338-18337387)
chr1 (125-206)||(38503304-38503385)
chr1 (132-192)||(51410022-51410083)
chr1 (94-126)||(5898210-5898242)
chr1 (137-189)||(31015044-31015096)
chr1 (146-206)||(34298420-34298480)
chr1 (138-192)||(6427459-6427516)
chr1 (95-126)||(9828138-9828169)
chr1 (138-197)||(14359529-14359587)
chr1 (95-126)||(22881572-22881603)
chr1 (137-204)||(30359374-30359441)
chr1 (146-204)||(2288182-2288240)
chr1 (132-206)||(5376501-5376575)
chr1 (132-182)||(6612172-6612222)
chr1 (138-183)||(5927347-5927392)
chr1 (147-216)||(9828019-9828087)
chr1 (132-197)||(19058857-19058922)
chr1 (120-219)||(35919265-35919370)
chr1 (132-225)||(36878427-36878519)
chr1 (139-187)||(2283669-2283717)
chr1 (146-206)||(6427334-6427394)
chr1 (158-206)||(9103624-9103672)
chr1 (158-206)||(16812527-16812575)
chr1 (132-190)||(17778549-17778604)
[»] chr4 (42 HSPs)
chr4 (95-206)||(30298930-30299043)
chr4 (95-206)||(30327798-30327911)
chr4 (120-197)||(12895105-12895182)
chr4 (132-191)||(24613702-24613761)
chr4 (139-217)||(11596360-11596438)
chr4 (132-206)||(12797339-12797412)
chr4 (132-206)||(23292987-23293061)
chr4 (137-214)||(24543957-24544035)
chr4 (132-190)||(54580024-54580082)
chr4 (139-204)||(19482654-19482719)
chr4 (139-204)||(40481623-40481687)
chr4 (120-192)||(3947755-3947827)
chr4 (132-192)||(21945501-21945561)
chr4 (139-200)||(715615-715677)
chr4 (139-200)||(752941-753003)
chr4 (132-225)||(4157112-4157207)
chr4 (138-204)||(14126118-14126184)
chr4 (137-183)||(29205451-29205497)
chr4 (132-206)||(35157986-35158060)
chr4 (132-197)||(2361976-2362041)
chr4 (144-189)||(14465088-14465133)
chr4 (138-183)||(28964255-28964300)
chr4 (158-239)||(32273553-32273633)
chr4 (138-206)||(4383352-4383419)
chr4 (157-217)||(11110708-11110768)
chr4 (132-212)||(16073373-16073452)
chr4 (136-206)||(20633469-20633536)
chr4 (138-197)||(28084514-28084574)
chr4 (137-197)||(31800484-31800544)
chr4 (132-192)||(34306805-34306864)
chr4 (138-197)||(38847019-38847078)
chr4 (132-206)||(49431009-49431084)
chr4 (98-128)||(17210039-17210069)
chr4 (139-205)||(27706185-27706251)
chr4 (137-182)||(6485617-6485662)
chr4 (132-197)||(12895275-12895340)
chr4 (97-126)||(35239202-35239231)
chr4 (139-218)||(37203239-37203315)
chr4 (95-127)||(4383448-4383480)
chr4 (95-123)||(12884352-12884380)
chr4 (146-206)||(36635308-36635368)
chr4 (139-195)||(51701253-51701309)
[»] scaffold0011 (1 HSPs)
scaffold0011 (131-217)||(17749-17835)
[»] chr2 (31 HSPs)
chr2 (138-239)||(21374706-21374807)
chr2 (95-206)||(19536366-19536473)
chr2 (132-219)||(37558949-37559035)
chr2 (95-206)||(20539637-20539749)
chr2 (132-206)||(15657848-15657922)
chr2 (132-206)||(30717531-30717605)
chr2 (132-206)||(15972857-15972931)
chr2 (132-206)||(18421947-18422021)
chr2 (132-206)||(30335401-30335475)
chr2 (137-206)||(6940239-6940308)
chr2 (132-205)||(18841014-18841087)
chr2 (137-206)||(23718010-23718079)
chr2 (137-206)||(24105682-24105751)
chr2 (137-206)||(30404856-30404925)
chr2 (132-192)||(20473320-20473380)
chr2 (132-191)||(974746-974805)
chr2 (140-219)||(37419714-37419793)
chr2 (132-190)||(2438720-2438778)
chr2 (132-225)||(26769471-26769569)
chr2 (132-197)||(12668424-12668489)
chr2 (137-190)||(12940941-12940994)
chr2 (139-204)||(38117167-38117232)
chr2 (132-204)||(36756345-36756417)
chr2 (132-192)||(5040730-5040792)
chr2 (121-239)||(14996213-14996330)
chr2 (132-206)||(23058443-23058518)
chr2 (132-190)||(11223864-11223922)
chr2 (139-204)||(29176501-29176566)
chr2 (98-183)||(34691777-34691857)
chr2 (98-183)||(34714189-34714269)
chr2 (138-206)||(21091707-21091775)
[»] chr8 (37 HSPs)
chr8 (132-206)||(22651960-22652034)
chr8 (139-219)||(36450762-36450841)
chr8 (140-211)||(30271300-30271371)
chr8 (132-206)||(15816130-15816204)
chr8 (132-201)||(4298887-4298956)
chr8 (132-239)||(25566789-25566899)
chr8 (132-191)||(29447111-29447170)
chr8 (132-206)||(18170483-18170557)
chr8 (132-206)||(18634051-18634125)
chr8 (138-204)||(22197749-22197815)
chr8 (132-202)||(24613509-24613578)
chr8 (132-185)||(4948657-4948710)
chr8 (132-205)||(13436965-13437038)
chr8 (137-206)||(25192353-25192422)
chr8 (137-206)||(29510310-29510379)
chr8 (132-191)||(2572057-2572116)
chr8 (132-195)||(8342967-8343030)
chr8 (138-197)||(8343309-8343368)
chr8 (132-206)||(5813576-5813650)
chr8 (132-206)||(20873053-20873127)
chr8 (139-214)||(21465391-21465463)
chr8 (139-203)||(22595981-22596045)
chr8 (136-192)||(41831945-41832001)
chr8 (137-192)||(18407717-18407772)
chr8 (95-126)||(22652070-22652101)
chr8 (132-183)||(28745505-28745556)
chr8 (132-202)||(31556985-31557054)
chr8 (95-124)||(11803355-11803384)
chr8 (138-183)||(30077394-30077439)
chr8 (139-191)||(17468516-17468568)
chr8 (162-206)||(24196628-24196672)
chr8 (94-126)||(31109462-31109494)
chr8 (137-197)||(31236583-31236643)
chr8 (95-183)||(34897092-34897175)
chr8 (146-206)||(36934654-36934714)
chr8 (137-181)||(40332200-40332244)
chr8 (136-204)||(44067502-44067570)
[»] chr3 (45 HSPs)
chr3 (125-219)||(34910289-34910382)
chr3 (95-183)||(25948851-25948939)
chr3 (132-203)||(10954939-10955010)
chr3 (132-206)||(10335287-10335361)
chr3 (132-206)||(55401059-55401133)
chr3 (95-190)||(21256953-21257045)
chr3 (139-203)||(4987299-4987363)
chr3 (138-197)||(14209106-14209165)
chr3 (137-204)||(20503451-20503518)
chr3 (132-206)||(8587022-8587096)
chr3 (132-217)||(25775481-25775567)
chr3 (132-206)||(28917985-28918059)
chr3 (138-239)||(14216845-14216944)
chr3 (138-239)||(14222974-14223073)
chr3 (132-224)||(21479079-21479176)
chr3 (137-190)||(26508110-26508163)
chr3 (132-197)||(28812508-28812573)
chr3 (132-239)||(39756188-39756294)
chr3 (123-192)||(49651778-49651847)
chr3 (99-195)||(7928445-7928536)
chr3 (161-217)||(10318064-10318119)
chr3 (142-239)||(14747513-14747610)
chr3 (132-204)||(14829676-14829747)
chr3 (132-204)||(16000017-16000089)
chr3 (146-217)||(21305218-21305290)
chr3 (136-192)||(35994743-35994798)
chr3 (132-195)||(1509534-1509597)
chr3 (138-205)||(10268493-10268560)
chr3 (138-197)||(14832092-14832151)
chr3 (132-195)||(51206354-51206417)
chr3 (158-215)||(8412972-8413029)
chr3 (138-224)||(32400715-32400798)
chr3 (132-204)||(41961651-41961723)
chr3 (132-191)||(750619-750678)
chr3 (95-126)||(34910400-34910431)
chr3 (132-206)||(15796295-15796369)
chr3 (136-206)||(24205046-24205116)
chr3 (132-206)||(26492206-26492280)
chr3 (158-204)||(40052318-40052364)
chr3 (147-192)||(14979179-14979224)
chr3 (132-197)||(34185124-34185189)
chr3 (139-191)||(3164033-3164085)
chr3 (137-205)||(17005625-17005693)
chr3 (132-192)||(27505244-27505304)
chr3 (137-197)||(29508437-29508497)
[»] scaffold0027 (1 HSPs)
scaffold0027 (95-239)||(46628-46771)
[»] scaffold0103 (1 HSPs)
scaffold0103 (139-206)||(51795-51862)
[»] scaffold0361 (1 HSPs)
scaffold0361 (140-197)||(14523-14580)
[»] scaffold0018 (1 HSPs)
scaffold0018 (138-206)||(178825-178894)
[»] scaffold0223 (1 HSPs)
scaffold0223 (138-206)||(20156-20224)
[»] scaffold0306 (1 HSPs)
scaffold0306 (132-206)||(13384-13458)
[»] scaffold0152 (1 HSPs)
scaffold0152 (132-206)||(21869-21943)
[»] scaffold0007 (1 HSPs)
scaffold0007 (136-206)||(225273-225343)
[»] scaffold0246 (1 HSPs)
scaffold0246 (139-204)||(19562-19626)
[»] scaffold0122 (1 HSPs)
scaffold0122 (132-197)||(8003-8067)
[»] scaffold0025 (1 HSPs)
scaffold0025 (132-219)||(23740-23828)
[»] scaffold0793 (1 HSPs)
scaffold0793 (139-200)||(4891-4953)
[»] scaffold0652 (1 HSPs)
scaffold0652 (132-206)||(463-537)
[»] scaffold0053 (1 HSPs)
scaffold0053 (132-206)||(8782-8856)
[»] scaffold0311 (1 HSPs)
scaffold0311 (169-206)||(10509-10546)
[»] scaffold0004 (1 HSPs)
scaffold0004 (138-206)||(92791-92859)
[»] scaffold0171 (1 HSPs)
scaffold0171 (120-239)||(23373-23490)
[»] scaffold0021 (1 HSPs)
scaffold0021 (137-192)||(130480-130535)
[»] scaffold0227 (1 HSPs)
scaffold0227 (139-197)||(7319-7377)
[»] scaffold0066 (1 HSPs)
scaffold0066 (143-197)||(33375-33429)
[»] scaffold0003 (1 HSPs)
scaffold0003 (132-206)||(241578-241652)
[»] scaffold0450 (1 HSPs)
scaffold0450 (132-192)||(8636-8696)
[»] scaffold0136 (1 HSPs)
scaffold0136 (138-182)||(3856-3900)
[»] scaffold0020 (1 HSPs)
scaffold0020 (132-204)||(135313-135385)


Alignment Details
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 95 - 206
Target Start/End: Complemental strand, 10298664 - 10298553
Alignment:
Q  95 aagcacggacactcctcggattagacgtgtccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtg 194  Q
    |||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10298664 aagcacggacactcctcggattaggcgtgtccgatacgacaccgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggcg 10298565  T
Q  195 tgttagtgtccg 206  Q
    ||||||||||||    
T  10298564 tgttagtgtccg 10298553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 8420117 - 8419992
Alignment:
Q  95 aagcacggacactcctcggattagacgtgtccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtg 194  Q
    ||||||||| |||||||| ||||| || ||||||     || |||||||||||||||||||| ||||||| | |||||||||||||||| | |||||| |    
T  8420117 aagcacggatactcctcgaattaggcgcgtccga-----caccgacacttgtaattacattgaattatgttattttttcaaattattagctatgtcggcg 8420023  T
Q  195 tgttagtgtccggtgtccgtgtccgcatccg 225  Q
    ||| | ||||||||||||||||||| |||||    
T  8420022 tgtcattgtccggtgtccgtgtccgtatccg 8419992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 21351906 - 21351979
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtcc 205  Q
    |||| ||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||| |||||||    
T  21351906 gacaccgacacttgtaattacactgaattatgtgactttttccaattattagttgtgtcggtgtgtcagtgtcc 21351979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 31084393 - 31084309
Alignment:
Q  120 cgtgtccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    ||||||||| | |||| |||||||||||||||||||| ||||||||| |||||||||||||||| |||||||| |||| ||||||    
T  31084393 cgtgtccgacacgacatcgacacttgtaattacattgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 31084309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 42893418 - 42893353
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||| ||||||||||||||||| || ||||||||| |||||||||||||||| |||||||||||||    
T  42893418 gacaccgacacttgtaattacactggattatgtgattttttcaaattattagctgtgtcggtgtgt 42893353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 6247680 - 6247609
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgt 203  Q
    |||| ||||||||||||||||| || ||||||||| |||||||||||||||| |||||||| |||| |||||    
T  6247680 gacaccgacacttgtaattacactgaattatgtgattttttcaaattattagatgtgtcggcgtgtcagtgt 6247609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 21191057 - 21191131
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||||||||| || ||||||||| |||||||||||||||| ||||||||  ||| ||||||||    
T  21191057 gacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcatgtcagtgtccg 21191131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 14674322 - 14674253
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    ||||||||||||||||| |  ||||||||| |||||||||||||||| |||||||| |||| ||||||||    
T  14674322 cgacacttgtaattacactaaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccg 14674253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 15405062 - 15405119
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgt 195  Q
    ||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| ||||    
T  15405062 gacacttgtaattacattgaattatatgattttttcaaattattagttgtgtcagtgt 15405119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 206
Target Start/End: Original strand, 13287366 - 13287474
Alignment:
Q  103 acactcctcggattagacgtgtccgataggacaa-----cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    ||||||||| |||||| ||||||||| ||||||      ||||||||||| ||||| || ||||||||| |||||||||||||||  |||||||  ||||    
T  13287366 acactcctcagattaggcgtgtccgacaggacacgacaccgacacttgtagttacactgaattatgtgattttttcaaattattatctgtgtcgacgtgt 13287465  T
Q  198 tagtgtccg 206  Q
    |||||||||    
T  13287466 tagtgtccg 13287474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 39698593 - 39698525
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||||||||||||||| || ||||||||| |||||||||||||||| |||||| | |||| ||||||||    
T  39698593 gacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtgtccg 39698525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 41995515 - 41995457
Alignment:
Q  146 taattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    ||||||||||| ||||||||| |||||| |||||||||||||||||| |||| ||||||    
T  41995515 taattacattgaattatgtgattttttcgaattattagttgtgtcggcgtgtcagtgtc 41995457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 21576746 - 21576803
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgt 189  Q
    |||| ||||||||||||||||| || ||||||||| |||||||||||||||| |||||    
T  21576746 gacatcgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgt 21576803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 33178083 - 33178018
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||| ||||||||||||||||| |  ||||||||| ||||| ||||||||||||||||||| ||||    
T  33178083 gacaccgacacttgtaattacactaaattatgtgatttttttaaattattagttgtgtcggcgtgt 33178018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 41633800 - 41633728
Alignment:
Q  125 ccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||||| |||| ||||| ||||||||||| || ||||||| | |||||||||||||||| |||||||| ||||    
T  41633800 ccgatacgacaccgacatttgtaattacactgaattatgtaaatttttcaaattattagctgtgtcggagtgt 41633728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 5894823 - 5894897
Alignment:
Q  121 gtgtccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgt 195  Q
    |||||||| | |||| ||||||||||| ||| |||  ||||| ||| ||||||||||||||||||||||| ||||    
T  5894823 gtgtccgacacgacaccgacacttgtagttagattaaattatatgattttttcaaattattagttgtgtccgtgt 5894897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 21522808 - 21522734
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||| ||||||||||| || ||||||| | ||||| |||||||||| |||||||| |||| ||||||||    
T  21522808 gacaccgacaattgtaattacactgaattatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccg 21522734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 21533374 - 21533300
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||| ||||||||||| || ||||||| | ||||| |||||||||| |||||||| |||| ||||||||    
T  21533374 gacaccgacaattgtaattacactgaattatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccg 21533300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 30135372 - 30135306
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgacttttt-caaattattagttgtgtcggtgtgt 197  Q
    |||| ||||||||||||||||| ||  |||||||| ||||| |||||||||||||||||||| ||||    
T  30135372 gacaccgacacttgtaattacaatgagttatgtgatttttttcaaattattagttgtgtcggcgtgt 30135306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 7677763 - 7677702
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggt 193  Q
    |||| |||||||| ||||| || || ||||||||| |||||||||||||||| |||||||||    
T  7677763 gacaccgacacttctaattgcactgaattatgtgattttttcaaattattagctgtgtcggt 7677702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 255
Target Start/End: Complemental strand, 10298556 - 10298523
Alignment:
Q  222 tccgcatccgtgcttcatggtcatactccctctc 255  Q
    ||||||||||||||||||||||||||||||||||    
T  10298556 tccgcatccgtgcttcatggtcatactccctctc 10298523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 17925189 - 17925258
Alignment:
Q  148 attacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtc 217  Q
    ||||||||| ||||||||| ||| | ||||||||| ||  |||||| ||| |||||||||||||||||||    
T  17925189 attacattgaattatgtgattttcttaaattattatttaggtcggtatgtcagtgtccggtgtccgtgtc 17925258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 21542088 - 21542028
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcgg 192  Q
    |||| ||||||||||||||||| || ||||||| |  |||| |||||||||||||||||||    
T  21542088 gacaccgacacttgtaattacactgaattatgttatctttttaaattattagttgtgtcgg 21542028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 3966561 - 3966474
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtccg 219  Q
    |||| |||||| | |||||||| || ||| ||||| ||| ||||||||||||  |||||||  ||| ||||||| |||||||||||||    
T  3966561 gacaccgacacatataattacactgaattgtgtgattttctcaaattattagcggtgtcggcatgtcagtgtccagtgtccgtgtccg 3966474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 126
Target Start/End: Complemental strand, 3966628 - 3966597
Alignment:
Q  95 aagcacggacactcctcggattagacgtgtcc 126  Q
    ||||||||||||||||||||||||||||||||    
T  3966628 aagcacggacactcctcggattagacgtgtcc 3966597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 4105310 - 4105241
Alignment:
Q  139 acacttgtaattacattgtattatgtgac--tttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    ||||||||||||||| || |||||||||   |||||||||||||||||| |||||| |||| ||| ||||    
T  4105310 acacttgtaattacactgaattatgtgatcttttttcaaattattagttatgtcggcgtgtcagtatccg 4105241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 12160005 - 12159951
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcg 191  Q
    ||||| |||||||||||||  ||||||||  ||||| ||||||||||||||||||    
T  12160005 cgacatttgtaattacattaaattatgtgttttttttaaattattagttgtgtcg 12159951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 18316951 - 18316989
Alignment:
Q  157 tattatgtgactttttcaaattattagttgtgtcggtgt 195  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  18316951 tattatgtgattttttaaaattattagttgtgtcggtgt 18316989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 19579759 - 19579685
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| |||||||||||||| || |  ||||||||| ||| |||||||||||| |||||||| || | ||||||||    
T  19579759 gacaccgacacttgtaattgcactaaattatgtgattttctcaaattattagctgtgtcggcgtatcagtgtccg 19579685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 24906307 - 24906373
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgt 203  Q
    ||||||||||||||||| || ||||||| | |||||||||||||||  ||||| || |||| |||||    
T  24906307 cgacacttgtaattacactgaattatgtcattttttcaaattattatctgtgttggcgtgtcagtgt 24906373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 37328845 - 37328919
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| |||||| |||||||||| || ||| ||||| |||| ||||||||| | ||||||||||| | ||||||||    
T  37328845 gacaccgacacatgtaattacactgaattttgtgatttttacaaattatttgctgtgtcggtgtatcagtgtccg 37328919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 17177029 - 17177098
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    ||||||||||||||||| || ||| | ||| |||||||||||||||| ||||| || || | ||||||||    
T  17177029 cgacacttgtaattacaatgaattttttgattttttcaaattattagctgtgttggcgtatcagtgtccg 17177098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 30098370 - 30098301
Alignment:
Q  146 taattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtg 215  Q
    ||||||||||| ||||||||| ||| |||||||||||   || |||  |||| |||||||||||||||||    
T  30098370 taattacattgaattatgtgattttctcaaattattaacggtttcgtcgtgtcagtgtccggtgtccgtg 30098301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 6770575 - 6770527
Alignment:
Q  158 attatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    ||||||||| ||| | ||||||||||||||||| |||||| ||||||||    
T  6770575 attatgtgattttcttaaattattagttgtgtcagtgtgtcagtgtccg 6770527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 19552570 - 19552618
Alignment:
Q  158 attatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    ||||||||| |||||||||||||||  |||||||| |||| ||||||||    
T  19552570 attatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccg 19552618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 30183607 - 30183547
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcgg 192  Q
    |||| ||||||||||||||| |  | || ||||||  ||||||||||||||||||||||||    
T  30183607 gacaccgacacttgtaattaaaccgaataatgtgatattttcaaattattagttgtgtcgg 30183547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 43001851 - 43001807
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattag 183  Q
    ||||||||||||||| || ||||||| | ||||||||||||||||    
T  43001851 acacttgtaattacactgaattatgtaattttttcaaattattag 43001807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 1694394 - 1694309
Alignment:
Q  1 ccagtttcattgaatttatactctcatattccaaggttttattgagaagaattggctattttttacctttcacaacctccatcatg 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1694394 ccagtttcattgaatttatactctcatattccaaggttttattgagaagaattggctattttttacctttcacaacctctatcatg 1694309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 132 - 225
Target Start/End: Original strand, 7801157 - 7801250
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtccgcatccg 225  Q
    |||| ||||||||||||||||  || ||||||||| ||||||||||||||||||||||||| |||||||||| |||| |||||||||| |||||    
T  7801157 gacaccgacacttgtaattacgctgaattatgtgattttttcaaattattagttgtgtcggcgtgttagtgttcggtatccgtgtccgtatccg 7801250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 95 - 206
Target Start/End: Original strand, 426483 - 426589
Alignment:
Q  95 aagcacggacactcctcggattagacgtgtccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtg 194  Q
    ||||||||||||||||| |||||| |||||||||     || |||||||||||||||||||  ||||||||| |||||||||||||||  |||||||| |    
T  426483 aagcacggacactcctcagattaggcgtgtccga-----caccgacacttgtaattacatttaattatgtgattttttcaaattattaactgtgtcggcg 426577  T
Q  195 tgttagtgtccg 206  Q
    ||| ||||||||    
T  426578 tgtcagtgtccg 426589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 12696394 - 12696277
Alignment:
Q  120 cgtgtccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtccg 219  Q
    ||||||||| | ||||  |||||||||||||||| || ||||||| | |||||||||||||||| |||||||| |||| ||||||| |||| ||||||||    
T  12696394 cgtgtccgacacgacactgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtgtcc-gtgt-cgtgtccg 12696297  T
Q  220 catccgcatccgtgcttcat 239  Q
      |||| |||||||||||||    
T  12696296 tgtccgtatccgtgcttcat 12696277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 28715353 - 28715243
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgt--gt-tagtgtccggtgtccgtgtccgcatccgcat 228  Q
    |||| ||||||||||||||||| || ||||||| | ||||||||||||||||  ||||| ||||  || | |||||||||||||||||||| ||||| ||    
T  28715353 gacaccgacacttgtaattacactgaattatgtcattttttcaaattattagccgtgtcagtgtccgtatcgtgtccggtgtccgtgtccgtatccgtat 28715254  T
Q  229 ccgtgcttcat 239  Q
    |||||||||||    
T  28715253 ccgtgcttcat 28715243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 1681811 - 1681745
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgt 203  Q
    ||||||||||||||||| || |||| |||| ||||||||||||||||||||||||| ||||||||||    
T  1681811 cgacacttgtaattacactgaattacgtgattttttcaaattattagttgtgtcggcgtgttagtgt 1681745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 2117170 - 2117069
Alignment:
Q  95 aagcacggacactcctcggattagacgtgtccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtg 194  Q
    ||||||||||||||||| |||||| | ||||||| | |||| |||||||| ||||| ||||| ||||||||| ||||||||||||||||  ||||||| |    
T  2117170 aagcacggacactcctccgattaggcatgtccgacacgaca-cgacacttataattgcattgaattatgtgattttttcaaattattagaggtgtcggag 2117072  T
Q  195 tgt 197  Q
    |||    
T  2117071 tgt 2117069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 9107371 - 9107445
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||||||||| || ||| ||||| |||||||||||||||| |||||||| |||||||||||||    
T  9107371 gacaccgacacttgtaattacactgaattttgtgattttttcaaattattagctgtgtcggcgtgttagtgtccg 9107445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 15489733 - 15489807
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| |||||||||||||||||||| ||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  15489733 gacaccgacacttgtaattacattgaattgtgtaattttttcaaattattagttgtgtcgacgtgttagtgtccg 15489807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 34595192 - 34595118
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| |||| | ||||||    
T  34595192 gacaccgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcattgtccg 34595118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 10770675 - 10770748
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtcc 205  Q
    |||| ||||||||||||||||| || ||||||||| |||||||||||||||||||||| || |||| |||||||    
T  10770675 gacaccgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgttggcgtgtcagtgtcc 10770748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 16766755 - 16766682
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtcc 205  Q
    |||| ||||||||||||||||| || ||||||||| |||||||||||||||| |||||||| |||| |||||||    
T  16766755 gacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtcc 16766682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 8776981 - 8777086
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg----gtgtccg-tgtccgcatccgcatccgtg 233  Q
    ||||||||||||||| || ||| ||||| ||||||||||||||||||||||||| |||| ||||||||    ||||||| ||||||  |||| |||||||    
T  8776981 acacttgtaattacactgaattttgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccgttgtccgtgtccgtatccgtg 8777080  T
Q  234 cttcat 239  Q
    ||||||    
T  8777081 cttcat 8777086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 16833361 - 16833294
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    ||||||||||||||||| || | ||||||| ||||||||||||||||||||||||| |||| ||||||    
T  16833361 cgacacttgtaattacactgaagtatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtc 16833294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 8365520 - 8365594
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| |||||||||||||||||  | |||||||||  |||||||||||||||||||||||| |||| ||||||||    
T  8365520 gacaccgacacttgtaattacaccgaattatgtgatattttcaaattattagttgtgtcggcgtgtcagtgtccg 8365594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 17302615 - 17302543
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtga-ctttttcaaattattagttgtgtcggtgtgttagtgt 203  Q
    ||||| ||||||||||||||||||| |||||||||  ||||||||||||||||||||||| | |||| |||||    
T  17302615 gacaatgacacttgtaattacattgaattatgtgatttttttcaaattattagttgtgtcagcgtgtcagtgt 17302543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 205
Target Start/End: Complemental strand, 7938214 - 7938101
Alignment:
Q  95 aagcacggacactcctcggattagacgtgtc-cgata--ggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcg 191  Q
    ||||||||||||||||||||| || |||||| || |   ||||| |||||||| |||||||| |  ||||| ||| |||||||||||||||| |||||||    
T  7938214 aagcacggacactcctcggatcaggcgtgtctcggtgtcggacaccgacacttataattacactaaattatatgattttttcaaattattagctgtgtcg 7938115  T
Q  192 gtgtgttagtgtcc 205  Q
    | |||| |||||||    
T  7938114 gcgtgtcagtgtcc 7938101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 17841598 - 17841664
Alignment:
Q  140 cacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||||||||||||| |  ||||||||| |||||||||||||||| |||||||| |||| ||||||||    
T  17841598 cacttgtaattacactaaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccg 17841664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 28152156 - 28152083
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||||||||| || ||||||||| |||||||||||||||| | |||||| |||| ||||||||    
T  28152156 gacaccgacacttgtaattacactgaattatgtga-tttttcaaattattagctttgtcggcgtgtcagtgtccg 28152083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 31959212 - 31959146
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgt 203  Q
    ||||||||||||||||| || ||||||||| |||||||||||||||| |||| ||| |||| |||||    
T  31959212 cgacacttgtaattacactgcattatgtgattttttcaaattattagctgtgacggcgtgtcagtgt 31959146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 853860 - 853925
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||| |||||||||||||| || |  ||||||||| ||||||||||||||||||||||||| ||||    
T  853860 gacaccgacacttgtaattgcacttaattatgtgattttttcaaattattagttgtgtcggcgtgt 853925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 7977831 - 7977896
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||| ||||||||||||||||| || ||||||| | |||||||||||||||| |||||||| ||||    
T  7977831 gacaccgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgt 7977896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 31384972 - 31384923
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattagttgt 187  Q
    |||||||||||||||| || ||||||||| ||||||||||||||||||||    
T  31384972 gacacttgtaattacactgaattatgtgattttttcaaattattagttgt 31384923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 1191706 - 1191761
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcgg 192  Q
    ||||||||||||||||| || ||| ||||| |||||||||||||||| ||||||||    
T  1191706 cgacacttgtaattacactgaattttgtgaatttttcaaattattagctgtgtcgg 1191761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 4878001 - 4877935
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgacttttt-caaattattagttgtgtcggtgtgt 197  Q
    |||| ||||||||||||||| | |  ||||||||||||||| ||||||||||| |||||||||||||    
T  4878001 gacaccgacacttgtaattatacttaattatgtgacttttttcaaattattagctgtgtcggtgtgt 4877935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 7027300 - 7027206
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgacttttt-caaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtccgcatccg 225  Q
    |||| |||||| | |||||||| || ||||||||| ||||| |||||||| ||  ||||||| || |||||||||| |||||||||||| |||||    
T  7027300 gacaccgacacatataattacactgaattatgtgatttttttcaaattatcaggggtgtcggcgtattagtgtccgatgtccgtgtccgtatccg 7027206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 4118341 - 4118384
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattatta 182  Q
    |||||||||||||||||  ||||||||| |||||||||||||||    
T  4118341 acacttgtaattacatttaattatgtgattttttcaaattatta 4118384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 34225824 - 34225906
Alignment:
Q  146 taattacattgtattatgtgactttttcaaattattagttgtgtcggtgt-gtta--gtgtccggtgtccgtgtccgcatccg 225  Q
    |||||||| || |||||| || ||||||||||||||||||||||| ||||  |||  |||||| ||||||||||||| |||||    
T  34225824 taattacactgaattatgcgattttttcaaattattagttgtgtcagtgtccttatcgtgtccagtgtccgtgtccgtatccg 34225906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 3398676 - 3398603
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||| |||| |||||||| || ||||| ||| |||||||||||||||| |||||||| |||| ||||||||    
T  3398676 gacaccgatacttataattacactgaattatatga-tttttcaaattattagctgtgtcggcgtgtcagtgtccg 3398603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 7930363 - 7930289
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||| |||| || |  ||||||||| ||||||||||||||| |||||||||  ||| ||||||||    
T  7930363 gacaccgacacttgaaatttcactaaattatgtgattttttcaaattattaattgtgtcggcatgtcagtgtccg 7930289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 9522944 - 9522898
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattag 183  Q
    ||||||||||||||||| || ||||||||| ||||| ||||||||||    
T  9522944 cgacacttgtaattacactgaattatgtgatttttttaaattattag 9522898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 33001290 - 33001355
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||| |||||| | ||||||||||  ||||||||| ||||||||||||||||  ||||||| ||||    
T  33001290 gacaccgacacatataattacatttaattatgtgattttttcaaattattagcagtgtcggcgtgt 33001355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 5970120 - 5970168
Alignment:
Q  143 ttgtaattacattgtattatgtgactttttcaaattattagttgtgtcg 191  Q
    ||||||||||| || ||||||||| |||||||||||||||  |||||||    
T  5970120 ttgtaattacactgaattatgtgattttttcaaattattaactgtgtcg 5970168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 24115862 - 24115906
Alignment:
Q  146 taattacattgtattatgtgactttttcaaattattagttgtgtc 190  Q
    |||||| |||| ||||||||| ||||| |||||||||||||||||    
T  24115862 taattatattgaattatgtgattttttgaaattattagttgtgtc 24115906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 30866150 - 30866210
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||||| | ||||||||||| ||||||||| ||| ||||||||||||  |||| |||||||    
T  30866150 cgacacatataattacattgaattatgtgattttctcaaattattagcggtgttggtgtgt 30866210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 9408328 - 9408420
Alignment:
Q  125 ccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtc 217  Q
    |||||| |||| ||||||||||||||||| |  ||||||||| ||||||||||||||| |||||||||||||| |||||| ||||||||||||    
T  9408328 ccgatacgacaccgacacttgtaattacactaaattatgtgattttttcaaattattaattgtgtcggtgtgtcagtgtctggtgtccgtgtc 9408420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 35862016 - 35861951
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgt 203  Q
    |||||||  |||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||    
T  35862016 gacacttacaattacattgaattatgtgattttttcaaattattagttgtgtcggcgtgttagtgt 35861951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 3991382 - 3991318
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtg 196  Q
    |||| ||||||||||||||| | || ||||||||| |||||||||||||||||||||||||||||    
T  3991382 gacaccgacacttgtaattatactgaattatgtgattttttcaaattattagttgtgtcggtgtg 3991318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 11061077 - 11061151
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||||||| | |  ||||||||| |||||||||||||||| ||||||||||||| ||||||||    
T  11061077 gacaccgacacttgtaattatactaaattatgtgattttttcaaattattagctgtgtcggtgtgtcagtgtccg 11061151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 18215187 - 18215261
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| |||||||||||| |||| || ||||||||| |||||||||||||||| || ||||| |||||||||||||    
T  18215187 gacaccgacacttgtaactacactgcattatgtgattttttcaaattattagctgcgtcggcgtgttagtgtccg 18215261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 239
Target Start/End: Complemental strand, 24105731 - 24105631
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtccgcatccgcatccgtgctt 236  Q
    ||||||||||||||||| || || |||  | |||||||||||||||| |||||||| |||| ||||||| |||| |||||||| ||||| ||||||||||    
T  24105731 cgacacttgtaattacactgaatcatgcaattttttcaaattattagctgtgtcggcgtgtcagtgtcc-gtgt-cgtgtccgtatccgtatccgtgctt 24105634  T
Q  237 cat 239  Q
    |||    
T  24105633 cat 24105631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 13770760 - 13770675
Alignment:
Q  121 gtgtccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||||||| | |||||||||||||||||||||| || ||||||| | ||||| |||||||||| |||||||| || | ||||||||    
T  13770760 gtgtccgacacgacaacgacacttgtaattacactgaattatgtaatttttttaaattattagctgtgtcggcgtatcagtgtccg 13770675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 24339700 - 24339635
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||| ||||||||||||||||| || ||||||||| |||||||||||||||| |||||||| ||||    
T  24339700 gacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgt 24339635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 7438764 - 7438704
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcgg 192  Q
    |||| |||||||||||||||||||| ||||||||| |||||||||||||||  ||||||||    
T  7438764 gacaccgacacttgtaattacattgaattatgtgattttttcaaattattaactgtgtcgg 7438704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 225
Target Start/End: Complemental strand, 9778569 - 9778462
Alignment:
Q  121 gtgtccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgt--gt-tagtgtccggtgtccgtgtc 217  Q
    |||||||| | |||| ||||||||||||||| | || ||||||||| ||||||||||||| || |||||| ||||  || | ||||||||||||||||||    
T  9778569 gtgtccgacacgacaccgacacttgtaattatactgaattatgtgattttttcaaattatcagctgtgtcagtgtccgtgtcgtgtccggtgtccgtgtc 9778470  T
Q  218 cgcatccg 225  Q
    || |||||    
T  9778469 cgtatccg 9778462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 25481953 - 25481895
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    ||||||||||||||| || ||||||||| |||||||||||||||| |||||||| ||||    
T  25481953 acacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgt 25481895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 27945099 - 27945025
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||||||||| || ||||||| | ||| ||||||||||||| ||||||| |||| ||||||||    
T  27945099 gacaccgacacttgtaattacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtccg 27945025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 5409825 - 5409910
Alignment:
Q  120 cgtgtccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtcc 205  Q
    ||||||||| | |||| |||||||||||||| || || ||||||||| |||||||||||||||| ||| || | |||| |||||||    
T  5409825 cgtgtccgacacgacaccgacacttgtaattgcactgaattatgtgattttttcaaattattagctgtatcagcgtgtcagtgtcc 5409910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 8234196 - 8234139
Alignment:
Q  140 cacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    ||||||||| |||| || ||||||| | ||||||||||||||||||||||||||||||    
T  8234196 cacttgtaactacactgaattatgttattttttcaaattattagttgtgtcggtgtgt 8234139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 32094009 - 32094093
Alignment:
Q  120 cgtgtccgataggacaacgacacttgtaattacattgtattatgtga-ctttttcaaattattagttgtgtcggtgtgttagtgt 203  Q
    ||||||||| | |||| ||||| ||||||||||| || |||||||||  |||||||||||||||||||||| ||  |||||||||    
T  32094009 cgtgtccgacacgacaccgacatttgtaattacactgaattatgtgatttttttcaaattattagttgtgttggcatgttagtgt 32094093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 43027470 - 43027576
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtcc-gcatccgcatcc 230  Q
    |||| ||||||||||| ||||| || ||||||||| |||||||||||||||| || ||||  |||| |||||||| |||| |||||| |  |||||||||    
T  43027470 gacaccgacacttgtatttacactgcattatgtgattttttcaaattattagctgggtcgccgtgtcagtgtccg-tgtc-gtgtccagtgtccgcatcc 43027567  T
Q  231 gtgcttcat 239  Q
    |||||||||    
T  43027568 gtgcttcat 43027576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 219
Target Start/End: Original strand, 11665441 - 11665528
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtccg 219  Q
    |||| |||||||| |||||| | || ||||||||| ||||||||||||||||||||||| | |||| | | ||| |||||||| ||||    
T  11665441 gacatcgacacttataattagactgaattatgtgattttttcaaattattagttgtgtcagcgtgtcaatatccagtgtccgtatccg 11665528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 33994270 - 33994199
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgt 203  Q
    |||| |||||||||||||| || || |||||||||| ||||||||||| |||||| ||||| |||| |||||    
T  33994270 gacaccgacacttgtaattgcactgaattatgtgaccttttcaaattagtagttgcgtcggcgtgtcagtgt 33994199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 11831481 - 11831404
Alignment:
Q  141 acttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtccg 219  Q
    ||||||||||||| |  ||||| ||| |||||||||||||||||||||||| |||| | |||||| |||||||| ||||    
T  11831481 acttgtaattacactaaattatatgattttttcaaattattagttgtgtcgatgtg-tcgtgtccagtgtccgtatccg 11831404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 26033467 - 26033513
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattag 183  Q
    ||||||||||||||||| || ||||||||| ||||||||||||||||    
T  26033467 cgacacttgtaattacactgaattatgtgattttttcaaattattag 26033513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 7197298 - 7197363
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||| |||||||||||||||||||| ||||  ||| ||||| |||||||||| |||||||| ||||    
T  7197298 gacaccgacacttgtaattacattgaattaaatgatttttttaaattattagctgtgtcggcgtgt 7197363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 6630913 - 6630985
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    |||| |||||| | |||||||| || |||| |||||||| ||||||||||||| ||||||| |||| ||||||    
T  6630913 gacatcgacacatataattacactgaattaagtgactttctcaaattattagtggtgtcggcgtgtcagtgtc 6630985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 25822720 - 25822648
Alignment:
Q  125 ccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||||| |||| ||||||||||||||||| || ||| ||    ||||||||||||||||||||||||| ||||    
T  25822720 ccgatacgacaccgacacttgtaattacactgaattgtgattttttttcaaattattagttgtgtcggcgtgt 25822648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 126
Target Start/End: Complemental strand, 1433573 - 1433542
Alignment:
Q  95 aagcacggacactcctcggattagacgtgtcc 126  Q
    ||||||||||||||||||||||||||||||||    
T  1433573 aagcacggacactcctcggattagacgtgtcc 1433542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 11272587 - 11272649
Alignment:
Q  132 gacaacgacacttgtaattacattgtattat--gtgactttttcaaattattagttgtgtcgg 192  Q
    |||| ||||||||||||||||| || |||||  |||| ||||||||||||| |||||||||||    
T  11272587 gacaccgacacttgtaattacactgaattatatgtgattttttcaaattatcagttgtgtcgg 11272649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 29763201 - 29763247
Alignment:
Q  158 attatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    ||||||||| ||||||||||||| |||||||| ||||||| ||||||    
T  29763201 attatgtgattttttcaaattataagttgtgttggtgtgtcagtgtc 29763247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 43250047 - 43249977
Alignment:
Q  136 acgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    ||||||||| |||||||| |||||||||| | ||| |||||||||||   ||||||| |||| ||||||||    
T  43250047 acgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccg 43249977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 124
Target Start/End: Original strand, 18035810 - 18035839
Alignment:
Q  95 aagcacggacactcctcggattagacgtgt 124  Q
    ||||||||||||||||||||||||||||||    
T  18035810 aagcacggacactcctcggattagacgtgt 18035839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 21826304 - 21826259
Alignment:
Q  159 ttatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    |||||||| ||||| ||||||||||| ||||||| |||||||||||    
T  21826304 ttatgtgatttttttaaattattagtcgtgtcggcgtgttagtgtc 21826259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 7058477 - 7058429
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattagttgt 187  Q
    ||||||||||||||| || ||||  ||| ||||||||||||||||||||    
T  7058477 acacttgtaattacactgaattacatgattttttcaaattattagttgt 7058429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 10042969 - 10042921
Alignment:
Q  158 attatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    ||||||||| ||| ||||||||||||| ||||||| |||| ||||||||    
T  10042969 attatgtgaatttatcaaattattagtggtgtcggcgtgtaagtgtccg 10042921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 21560568 - 21560484
Alignment:
Q  125 ccgataggacaacgacacttgtaattacattgtattatgtgacttt-----ttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    |||||| |||| ||||||||||||||||| || ||||||||| |||     ||||||||||||| ||| |||| |||| ||||||    
T  21560568 ccgatacgacaccgacacttgtaattacactgaattatgtgattttttttcttcaaattattagctgtatcggcgtgtcagtgtc 21560484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 29787384 - 29787444
Alignment:
Q  146 taattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||||||| || ||||||||| ||| ||||||||||||  ||||||| |||||| ||||||    
T  29787384 taattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgttaatgtccg 29787444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 40287363 - 40287422
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    ||||||||||||||||| || || || ||| |||||||||||||| |||||||||| ||||    
T  40287363 cgacacttgtaattacactgaat-atatgattttttcaaattattcgttgtgtcggcgtgt 40287422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 48438604 - 48438560
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaa 176  Q
    |||| |||||| ||||||||||||| ||||||||| |||||||||    
T  48438604 gacaccgacacgtgtaattacattgaattatgtgattttttcaaa 48438560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 49)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 32434723 - 32434798
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggt-gtgttagtgtccggtgtcc 212  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  32434723 gacacttgtaattacaatgaattatgtgactttttcaaattattagttgtgtcggtggtgtcagtgtccggtgtcc 32434798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 38078662 - 38078769
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtcc-gtgtccgcatccgcatcc 230  Q
    |||| |||||||||||||||||||| ||||||||| |||||||||||||||| |||||||  |||| ||||| | |||||| |||||||  |||| ||||    
T  38078662 gacaccgacacttgtaattacattgaattatgtgattttttcaaattattagctgtgtcgacgtgtcagtgttc-gtgtccggtgtccgtgtccgtatcc 38078760  T
Q  231 gtgcttcat 239  Q
    |||||||||    
T  38078761 gtgcttcat 38078769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 37598889 - 37598803
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtccg 219  Q
    |||| |||||||| |||||||| || ||| ||||| ||||||||||||||||||||||||| |||| ||||||||||||| |||||||    
T  37598889 gacaccgacacttataattacactgaatt-tgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccggtgtctgtgtccg 37598803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 22881617 - 22881689
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    |||| ||||||||||||||||| |  ||||||||| ||||||||||||||||||||||||| |||| ||||||    
T  22881617 gacaccgacacttgtaattacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtc 22881689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 31672896 - 31672979
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtg 215  Q
    |||| ||| ||||||||||||| || |||| |||| |||||||||||||||| ||||||||||||| ||||||| || ||||||    
T  31672896 gacaccgagacttgtaattacactgaattaagtgattttttcaaattattagctgtgtcggtgtgtcagtgtcccgtatccgtg 31672979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 40258934 - 40258997
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgt 195  Q
    |||| ||||||||||||||||| || ||||||||| ||||||||||||||| ||||||||||||    
T  40258934 gacaccgacacttgtaattacactgaattatgtgattttttcaaattattaattgtgtcggtgt 40258997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 1704993 - 1705067
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||||||||  || ||||||||| |||||||||||||||| |||||||||||||  |||||||    
T  1704993 gacaccgacacttgtaattaccctgaattatgtgattttttcaaattattagatgtgtcggtgtgtcggtgtccg 1705067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 24577187 - 24577245
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtc 190  Q
    |||| ||||||||||||||||| || ||||||||| |||||||||||||||||||||||    
T  24577187 gacaccgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgtc 24577245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 206
Target Start/End: Original strand, 48450555 - 48450662
Alignment:
Q  95 aagcacggacactcctcggattagacgtgtccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtg 194  Q
    ||||||||||||||||||||||||||||||||  |  | |  ||||||||||||||||| |  ||||||| | |||||||||||||||| ||||| || |    
T  48450555 aagcacggacactcctcggattagacgtgtcctgt--gtc--cgacacttgtaattacactaaattatgttattttttcaaattattagctgtgttggcg 48450650  T
Q  195 tgttagtgtccg 206  Q
    ||| ||||||||    
T  48450651 tgtcagtgtccg 48450662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 28273083 - 28273147
Alignment:
Q  126 cgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtc 190  Q
    |||||||||| ||||||||||||||||| || ||||| ||| |||||||||| ||||||||||||    
T  28273083 cgataggacaccgacacttgtaattacactgaattatatgattttttcaaatgattagttgtgtc 28273147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 1815316 - 1815241
Alignment:
Q  131 ggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    ||||| ||||||||||||||||| || ||||||||| ||||| |||| |||| ||||||||| |||| ||||||||    
T  1815316 ggacaccgacacttgtaattacactgaattatgtgattttttaaaataattatttgtgtcggcgtgtcagtgtccg 1815241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 219
Target Start/End: Original strand, 46348384 - 46348470
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtccg 219  Q
    |||| ||||||||||||||||| |  ||||| ||| |||||||||||||||| |||||||| |||| ||||||| |||||||| ||||    
T  46348384 gacaccgacacttgtaattacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtcc-gtgtccgtatccg 46348470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 113350 - 113292
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    ||||||||||||||| || ||||||||| |||||||||||||||| |||||||| ||||    
T  113350 acacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgt 113292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 1486698 - 1486768
Alignment:
Q  120 cgtgtccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtc 190  Q
    ||||||||| | |||| |||||||| |||||||| || ||||||||| |||||||||||||||| ||||||    
T  1486698 cgtgtccgacacgacaccgacacttataattacactgaattatgtgattttttcaaattattagctgtgtc 1486768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 18556466 - 18556543
Alignment:
Q  141 acttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtccg 219  Q
    |||||||||||||||  |||||||||  ||||||||||||||| |||||||| |||| ||||||| |||||||| ||||    
T  18556466 acttgtaattacattaaattatgtgatattttcaaattattagctgtgtcggcgtgtcagtgtcc-gtgtccgtatccg 18556543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 224
Target Start/End: Original strand, 24334669 - 24334799
Alignment:
Q  95 aagcacggacactcctcggattagacgtgtccgataggacaacgacacttgtaattacattgtattatg-tgactttttcaaattattagttgtgtcggt 193  Q
    ||||||||||||| || ||||||| |||| |   |  |||| ||||||||||||||||| || ||||||     |||||||||| ||||| |||||||||    
T  24334669 aagcacggacactacttggattaggcgtgacgtgtccgacaccgacacttgtaattacactgaattatgcattttttttcaaatgattagctgtgtcggt 24334768  T
Q  194 gtgttagtgtccggtgtccgtgtccgcatcc 224  Q
    ||||  |||||||||||||||||||| ||||    
T  24334769 gtgtccgtgtccggtgtccgtgtccgtatcc 24334799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 32461471 - 32461529
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||||||||||||||||  ||||||||| ||||||||||||||||||||| ||| ||||    
T  32461471 acacttgtaattacattaaattatgtgattttttcaaattattagttgtgccggcgtgt 32461529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 42359450 - 42359524
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||||||||| || ||| ||||| |||||||||||||||| |||||| | |||| ||||||||    
T  42359450 gacaccgacacttgtaattacactgaattttgtgattttttcaaattattagatgtgtcagcgtgtcagtgtccg 42359524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 239
Target Start/End: Original strand, 398780 - 398878
Alignment:
Q  146 taattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg----gtgtcc-gtgtccgcatccgcatccgtgcttcat 239  Q
    |||||||| || ||||||||| ||||||||||||||||  ||||||| |||| ||||||||    |||||| |||||||| |||| |||||||||||||    
T  398780 taattacactgaattatgtgattttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgcgtccgtatccgtgcttcat 398878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 239
Target Start/End: Original strand, 3490351 - 3490497
Alignment:
Q  94 aaagcacggacactcctcggattagacgtgtccga---taggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtc 190  Q
    |||||||||||||| ||||||||||| |||||| |   | ||||| ||||||||||||||||| || || ||||   ||| ||||||||||||  |||||    
T  3490351 aaagcacggacacttctcggattagatgtgtcccaatgtcggaca-cgacacttgtaattacactgaataatgtagttttctcaaattattagcagtgtc 3490449  T
Q  191 ggtgtgttagtgtccggtgtcc-gtgtccgcatccgcatccgtgcttcat 239  Q
    || |||| ||||||  |||||| ||||| | ||||| |||||||||||||    
T  3490450 ggcgtgtcagtgtc--gtgtccggtgtctgtatccgtatccgtgcttcat 3490497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 21378631 - 21378571
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    ||||||||||||||||| || ||||||| | |||||||| ||||||| |||||||||||||    
T  21378631 cgacacttgtaattacactgaattatgtaattttttcaatttattagctgtgtcggtgtgt 21378571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 47989555 - 47989484
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    |||| ||||||||||||||||| || ||||||||| ||||| ||||||||| ||||||||| |||| ||||||    
T  47989555 gacaccgacacttgtaattacactgaattatgtgatttttttaaattatta-ttgtgtcggcgtgtcagtgtc 47989484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 6332728 - 6332666
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgt 195  Q
    |||| ||| ||||||||||||| || ||||||||| ||||||||||||||||||||||| ||||    
T  6332728 gacaccgatacttgtaattacactgaattatgtga-tttttcaaattattagttgtgtccgtgt 6332666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 18190109 - 18190167
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtc 190  Q
    |||| ||||||||||||||||| || ||||||| | |||||||||||||||| ||||||    
T  18190109 gacatcgacacttgtaattacactgaattatgtaattttttcaaattattaggtgtgtc 18190167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 22515888 - 22515946
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtc 190  Q
    |||| ||||||||||||||||| |  ||||||||| |||||||||||||||| ||||||    
T  22515888 gacaccgacacttgtaattacactaaattatgtgattttttcaaattattagctgtgtc 22515946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 18337387 - 18337338
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattatt 181  Q
    |||| ||||||||||||||||| || ||||||||| ||||||||||||||    
T  18337387 gacaccgacacttgtaattacactgaattatgtgattttttcaaattatt 18337338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 206
Target Start/End: Complemental strand, 38503385 - 38503304
Alignment:
Q  125 ccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| |||||| |||||| | |||||||| || | ||| ||| ||| ||||||||||||  |||||||||||||||||||||    
T  38503385 ccgacaggacaccgacacatataattacactgaaatatatgattttctcaaattattagcggtgtcggtgtgttagtgtccg 38503304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 51410083 - 51410022
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtga-ctttttcaaattattagttgtgtcgg 192  Q
    |||| ||||||||||||||||| || |||||||||  |||||||||||||||| ||||||||    
T  51410083 gacaccgacacttgtaattacactgaattatgtgatttttttcaaattattagatgtgtcgg 51410022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 5898210 - 5898242
Alignment:
Q  94 aaagcacggacactcctcggattagacgtgtcc 126  Q
    |||||||||||||||||||||||||||||||||    
T  5898210 aaagcacggacactcctcggattagacgtgtcc 5898242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 31015096 - 31015044
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgt 189  Q
    ||||||||||||||||| || ||||||||| ||| |||||||||||| |||||    
T  31015096 cgacacttgtaattacactgaattatgtgattttctcaaattattagctgtgt 31015044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 34298480 - 34298420
Alignment:
Q  146 taattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||||||| || ||||||||| ||| ||||||||||||| |||||||||||| ||| ||||    
T  34298480 taattacactgaattatgtgattttctcaaattattagtggtgtcggtgtgtcagtttccg 34298420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 6427516 - 6427459
Alignment:
Q  138 gacacttgtaattacattgtattatgtgacttttt---caaattattagttgtgtcgg 192  Q
    |||||||||| |||||||| ||||||||| |||||   ||||||||||||||||||||    
T  6427516 gacacttgtagttacattgaattatgtgatttttttttcaaattattagttgtgtcgg 6427459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 126
Target Start/End: Complemental strand, 9828169 - 9828138
Alignment:
Q  95 aagcacggacactcctcggattagacgtgtcc 126  Q
    ||||||||||||||||||||||||||||||||    
T  9828169 aagcacggacactcctcggattagacgtgtcc 9828138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 14359529 - 14359587
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||||||||||||||| |  ||||||||| |||||||||||||||| |||||||| ||||    
T  14359529 gacacttgtaattacactaaattatgtga-tttttcaaattattagctgtgtcggcgtgt 14359587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 126
Target Start/End: Original strand, 22881572 - 22881603
Alignment:
Q  95 aagcacggacactcctcggattagacgtgtcc 126  Q
    ||||||||||||||||||||||||||||||||    
T  22881572 aagcacggacactcctcggattagacgtgtcc 22881603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 30359441 - 30359374
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    ||||||||| | ||||| |  ||||||||| ||||||||||||| ||||||| |||||||| ||||||    
T  30359441 cgacacttgcagttacactaaattatgtgattttttcaaattatcagttgtgccggtgtgtcagtgtc 30359374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 2288182 - 2288240
Alignment:
Q  146 taattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    ||||||||||| ||||||||| ||| | ||||||||| |  ||||||||||||||||||    
T  2288182 taattacattgaattatgtgattttcttaaattattattgttgtcggtgtgttagtgtc 2288240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 5376501 - 5376575
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| |||||||| |||||||| || ||||||| | ||| | ||||||||||  ||||||| |||||||||||||    
T  5376501 gacaccgacacttttaattacactgaattatgttattttcttaaattattagcggtgtcggcgtgttagtgtccg 5376575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 6612172 - 6612222
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattatta 182  Q
    |||| ||||||||||||||||| || ||||||| | |||||||||||||||    
T  6612172 gacaccgacacttgtaattacactgaattatgtaattttttcaaattatta 6612222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 5927347 - 5927392
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattag 183  Q
    ||||||||||||||||||  ||||| ||| ||||||||||||||||    
T  5927347 gacacttgtaattacattaaattatatgattttttcaaattattag 5927392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 9828087 - 9828019
Alignment:
Q  147 aattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgt 216  Q
    ||||||| || ||||||||| ||| ||||||||||||| ||||||| ||| | |||||||||||| ||||    
T  9828087 aattacactgaattatgtgattttatcaaattattagtggtgtcggcgtg-tcgtgtccggtgtctgtgt 9828019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 19058857 - 19058922
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||| ||||||||||||||||| || ||||||| |  |||| |||||||||| |||||||| ||||    
T  19058857 gacaccgacacttgtaattacactgaattatgttatctttttaaattattagctgtgtcggcgtgt 19058922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 219
Target Start/End: Original strand, 35919265 - 35919370
Alignment:
Q  120 cgtgtccgataggacaacgacacttgtaattacattgtattatgtgacttttt-----caaattattagttgtgtcggtgtgttagtgtccg-gtgtccg 213  Q
    ||||||||| | ||||  ||||||| |||||||| || ||||||||| |||||     ||||||||||| |||||||| ||||| ||||||| ||||| |    
T  35919265 cgtgtccgacacgacacggacacttataattacactgaattatgtgattttttttcttcaaattattagatgtgtcggagtgttggtgtccgtgtgtcag 35919364  T
Q  214 tgtccg 219  Q
    ||||||    
T  35919365 tgtccg 35919370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 36878519 - 36878427
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtccgcatccg 225  Q
    |||| |||||| | |||||||| || ||||||||| ||| ||||||||||||  ||||||| |||| ||||| |  |||||||||||| |||||    
T  36878519 gacaccgacacctataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgt-ctatgtccgtgtccgtatccg 36878427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 2283717 - 2283669
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattagttgt 187  Q
    |||||| ||||||||||| || |||||| ||||||||||||| ||||||    
T  2283717 acacttataattacattgaatcatgtgattttttcaaattataagttgt 2283669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 6427394 - 6427334
Alignment:
Q  146 taattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    ||||||||||| ||||||||| ||| ||||||||||||  |||| || |||| ||||||||    
T  6427394 taattacattgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtccg 6427334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 9103672 - 9103624
Alignment:
Q  158 attatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    ||||||||| |||||||||||||||  |||||||| |||| ||||||||    
T  9103672 attatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccg 9103624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 16812575 - 16812527
Alignment:
Q  158 attatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    ||||||||| ||| ||||||||||| | |||||||||||| ||||||||    
T  16812575 attatgtgattttgtcaaattattattggtgtcggtgtgtcagtgtccg 16812527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 17778604 - 17778549
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtc 190  Q
    |||| ||||||||||||||||| |||||   |||| |||||||||||||||| ||||||    
T  17778604 gacaccgacacttgtaattacactgtat---gtgattttttcaaattattagctgtgtc 17778549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 95 - 206
Target Start/End: Complemental strand, 30299043 - 30298930
Alignment:
Q  95 aagcacggacactcctcggattagacgtgt-ccgataggacaacgacacttgtaattacattgtattatgtga-ctttttcaaattattagttgtgtcgg 192  Q
    |||||||||||||||||||||||||||||| |||  | |||| ||||||||||||||||| || ||||||| |  |||||||||||||||| ||||||||    
T  30299043 aagcacggacactcctcggattagacgtgtcccggcacgacaccgacacttgtaattacactgaattatgtcatttttttcaaattattagctgtgtcgg 30298944  T
Q  193 tgtgttagtgtccg 206  Q
     |||| ||||||||    
T  30298943 cgtgtcagtgtccg 30298930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 95 - 206
Target Start/End: Complemental strand, 30327911 - 30327798
Alignment:
Q  95 aagcacggacactcctcggattagacgtgt-ccgataggacaacgacacttgtaattacattgtattatgtga-ctttttcaaattattagttgtgtcgg 192  Q
    |||||||||||||||||||||||||||||| |||  | |||| ||||||||||||||||| || ||||||| |  |||||||||||||||| ||||||||    
T  30327911 aagcacggacactcctcggattagacgtgtcccggcacgacaccgacacttgtaattacactgaattatgtcatttttttcaaattattagctgtgtcgg 30327812  T
Q  193 tgtgttagtgtccg 206  Q
     |||| ||||||||    
T  30327811 cgtgtcagtgtccg 30327798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 12895105 - 12895182
Alignment:
Q  120 cgtgtccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    ||||||||| | |||| |||||||||||||||| ||| ||||||||| |||||||||||||||| ||| |||| ||||    
T  12895105 cgtgtccgacacgacaccgacacttgtaattactttgaattatgtgattttttcaaattattagctgtttcggcgtgt 12895182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 24613702 - 24613761
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcg 191  Q
    |||| ||||||||||| |||||||| ||||||||| ||| ||||||||||||||||||||    
T  24613702 gacaccgacacttgtacttacattgaattatgtgattttctcaaattattagttgtgtcg 24613761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 11596360 - 11596438
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtc 217  Q
    ||||||||||||||| || ||||||||| |||||||||||||||| | ||| || || | |||||| ||||||||||||    
T  11596360 acacttgtaattacactgaattatgtgattttttcaaattattagctttgttggcgtatcagtgtctggtgtccgtgtc 11596438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 12797339 - 12797412
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||||||||| || ||||||||| |||||||||||||||||| || ||| |||| ||||||||    
T  12797339 gacaccgacacttgtaattacactgaattatgtga-tttttcaaattattagttttgccggcgtgtcagtgtccg 12797412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 23292987 - 23293061
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||||||| | || ||||||||| |||||||||||||||| |||||||| |||| | ||||||    
T  23292987 gacaccgacacttgtaattatactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccg 23293061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 24544035 - 24543957
Alignment:
Q  137 cgacacttgtaattacattgtattatgtg-actttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgt 214  Q
    ||||||||||||||||| || |||| ||| | ||||| ||||||||||||||||||| |||| |||||| |||||||||    
T  24544035 cgacacttgtaattacaatgcattaagtgtatttttttaaattattagttgtgtcggcgtgtcagtgtctggtgtccgt 24543957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 54580024 - 54580082
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtc 190  Q
    |||| |||||||| |||||||| || ||||||||| |||||||||||||||||||||||    
T  54580024 gacaccgacacttataattacactgaattatgtgattttttcaaattattagttgtgtc 54580082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 19482719 - 19482654
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    |||||||||||||||  | |||||||||  |||||||||||||||||||||||| |||| ||||||    
T  19482719 acacttgtaattacaccgaattatgtgatattttcaaattattagttgtgtcggcgtgtcagtgtc 19482654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 40481687 - 40481623
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    ||||||||||||||| || ||||||||| |||||||||||||||||||| |||| |||| ||||||    
T  40481687 acacttgtaattacactgaattatgtga-tttttcaaattattagttgtatcggcgtgtcagtgtc 40481623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 3947755 - 3947827
Alignment:
Q  120 cgtgtccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcgg 192  Q
    ||||||||| | ||||  |||||||||||||||| || |||||| || |||||||||||||||| ||||||||    
T  3947755 cgtgtccgacacgacactgacacttgtaattacactgaattatgcgattttttcaaattattagctgtgtcgg 3947827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 21945561 - 21945501
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcgg 192  Q
    |||| ||||||||||||||||| || ||||||| | |||||||||||||||| ||||||||    
T  21945561 gacaccgacacttgtaattacactgaattatgtcattttttcaaattattagctgtgtcgg 21945501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 715615 - 715677
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttc-aaattattagttgtgtcggtgtgttag 200  Q
    ||||||||||||||| || ||||||||| |||||  |||||||||| ||||||||||||||||    
T  715615 acacttgtaattacactgaattatgtgattttttttaaattattagctgtgtcggtgtgttag 715677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 752941 - 753003
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttc-aaattattagttgtgtcggtgtgttag 200  Q
    ||||||||||||||| || ||||||||| |||||  |||||||||| ||||||||||||||||    
T  752941 acacttgtaattacactgaattatgtgattttttttaaattattagctgtgtcggtgtgttag 753003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 4157207 - 4157112
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt---tagtgtccggtgtccgtgtccgcatccg 225  Q
    |||| |||||||||||||| || |  ||||||||| ||||||||||||||||||||||| |||| |   | ||||| |||||||||||||| |||||    
T  4157207 gacaccgacacttgtaattgcactaaattatgtga-tttttcaaattattagttgtgtcagtgtctgtgtcgtgtctggtgtccgtgtccgtatccg 4157112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 14126118 - 14126184
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    ||||||| |||||||| || ||||||||||||| |||||||||||   ||||||| |||||||||||    
T  14126118 gacacttataattacactgaattatgtgactttatcaaattattaacagtgtcggcgtgttagtgtc 14126184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 29205497 - 29205451
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattag 183  Q
    ||||||||||||||||| || ||||||||| ||||||||||||||||    
T  29205497 cgacacttgtaattacactgaattatgtgattttttcaaattattag 29205451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 35157986 - 35158060
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| |||||||| |||||||| |  ||||||||| |||| |||||||||||||| ||||| |||| ||||||||    
T  35157986 gacaccgacacttataattacactaaattatgtgatttttccaaattattagttgcgtcggcgtgtcagtgtccg 35158060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 2361976 - 2362041
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||| |||||||| |||||||| |  ||||||| | |||||||||||||||| |||||||||||||    
T  2361976 gacaccgacacttttaattacactaaattatgtaattttttcaaattattagctgtgtcggtgtgt 2362041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 14465088 - 14465133
Alignment:
Q  144 tgtaattacattgtattatgtgactttttcaaattattagttgtgt 189  Q
    ||||||||||||| ||||||||| |||||||||||||||| |||||    
T  14465088 tgtaattacattgaattatgtgattttttcaaattattaggtgtgt 14465133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 28964255 - 28964300
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattag 183  Q
    |||||||||||||||| || ||||||||| ||||||||||||||||    
T  28964255 gacacttgtaattacactgaattatgtgattttttcaaattattag 28964300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 32273553 - 32273633
Alignment:
Q  158 attatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtccgcatccgcatccgtgcttcat 239  Q
    ||||||| | |||||||||||||||||||||| || |||| | ||||||||||| ||||||  ||||| || ||||||||||    
T  32273553 attatgttattttttcaaattattagttgtgttggcgtgtca-tgtccggtgtctgtgtccatatccgtattcgtgcttcat 32273633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 4383419 - 4383352
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||| || ||||||||| |||||||||||||||||||| |||  |||| ||||||||    
T  4383419 gacatttgtaattacactgaattatgtga-tttttcaaattattagttgtatcgacgtgtcagtgtccg 4383352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 11110708 - 11110768
Alignment:
Q  157 tattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtc 217  Q
    ||||||||||  |||||||||||||  ||||||||| ||||  ||||||||||||||||||    
T  11110708 tattatgtgatattttcaaattattccttgtgtcggcgtgtctgtgtccggtgtccgtgtc 11110768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 16073452 - 16073373
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtcc 212  Q
    |||| ||||||||||||||||| || |||||| || ||||||||||||||| |||||| || |||| || |||| ||||||    
T  16073452 gacaccgacacttgtaattacactgaattatgcga-tttttcaaattattacttgtgttggcgtgtcagagtccagtgtcc 16073373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 20633536 - 20633469
Alignment:
Q  136 acgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    ||||||||||||||||||||| |||||||   ||||||||||||||||  ||||||  |||| ||||||||    
T  20633536 acgacacttgtaattacattgaattatgt---tttttcaaattattagcggtgtcgacgtgtcagtgtccg 20633469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 28084574 - 28084514
Alignment:
Q  138 gacacttgtaattacattgtattatgtga-ctttttcaaattattagttgtgtcggtgtgt 197  Q
    ||||||||||||||||||| |||||||||  ||||||||||| |||| |||||||| ||||    
T  28084574 gacacttgtaattacattgaattatgtgatttttttcaaattcttagctgtgtcggcgtgt 28084514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 31800484 - 31800544
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||||||||||||||||||  ||||| | | ||||| |||||||||| |||||||||||||    
T  31800484 cgacacttgtaattacattaaattatttaattttttaaaattattagctgtgtcggtgtgt 31800544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 34306805 - 34306864
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcgg 192  Q
    |||| ||||||||||||||||| |  ||||| ||| |||||||||||||||||||||||||    
T  34306805 gacaccgacacttgtaattacactacattatctga-tttttcaaattattagttgtgtcgg 34306864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 38847019 - 38847078
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||||||||||||||| || || || ||| |||||||||||||||| |||||||| ||||    
T  38847019 gacacttgtaattacactgaataatatgattttttcaaattattagctgtgtcggagtgt 38847078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 49431084 - 49431009
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgacttttt-caaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| |||||||| |||||||| || ||||||||| ||||| ||||||||||| |||||||| |||| | ||||||    
T  49431084 gacaccgacacttttaattacactgaattatgtgatttttttcaaattattagctgtgtcggcgtgtcactgtccg 49431009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 128
Target Start/End: Original strand, 17210039 - 17210069
Alignment:
Q  98 cacggacactcctcggattagacgtgtccga 128  Q
    |||||||||||||||||||||||||||||||    
T  17210039 cacggacactcctcggattagacgtgtccga 17210069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 27706185 - 27706251
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtcc 205  Q
    ||||||||||||||| |  ||||||||| ||||| ||||||||| ||||||||  |||| |||||||    
T  27706185 acacttgtaattacactaaattatgtgatttttttaaattattaattgtgtcgacgtgtcagtgtcc 27706251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 6485617 - 6485662
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattatta 182  Q
    ||||||||||||||||| |  ||||||||| |||||||||||||||    
T  6485617 cgacacttgtaattacactaaattatgtgattttttcaaattatta 6485662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 12895275 - 12895340
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||| |||||||| ||||||||    ||||||||| ||||||||||||||| ||||||||| ||||    
T  12895275 gacaccgacacttataattacacaaaattatgtgattttttcaaattattatttgtgtcggcgtgt 12895340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 126
Target Start/End: Complemental strand, 35239231 - 35239202
Alignment:
Q  97 gcacggacactcctcggattagacgtgtcc 126  Q
    ||||||||||||||||||||||||||||||    
T  35239231 gcacggacactcctcggattagacgtgtcc 35239202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 37203315 - 37203239
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtcc 218  Q
    ||||||||||||||| |  ||||||| | ||||||||||||||||  ||||| |||   | |||||||||||||||||||    
T  37203315 acacttgtaattacactaaattatgtcattttttcaaattattagccgtgtctgtg---tcgtgtccggtgtccgtgtcc 37203239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 4383480 - 4383448
Alignment:
Q  95 aagcacggacactcctcggattagacgtgtccg 127  Q
    |||||||||||||||||||||||| ||||||||    
T  4383480 aagcacggacactcctcggattaggcgtgtccg 4383448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Original strand, 12884352 - 12884380
Alignment:
Q  95 aagcacggacactcctcggattagacgtg 123  Q
    |||||||||||||||||||||||||||||    
T  12884352 aagcacggacactcctcggattagacgtg 12884380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 36635368 - 36635308
Alignment:
Q  146 taattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||||||| || ||||||||| ||| ||||||||||||| |||| || |||| ||||||||    
T  36635368 taattacactgaattatgtgattttctcaaattattagtggtgttggcgtgtcagtgtccg 36635308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 51701309 - 51701253
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgt 195  Q
    ||||||||||||||| |  ||||||| | |||||||||||||||| |||||| ||||    
T  51701309 acacttgtaattacactcaattatgtaattttttcaaattattagctgtgtccgtgt 51701253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 17749 - 17835
Alignment:
Q  131 ggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtc 217  Q
    ||||| ||||||||||||||||| |  ||||||||| ||||||||||||||||||||||| | |||||| |||||| ||||||||||    
T  17749 ggacaccgacacttgtaattacactaaattatgtgattttttcaaattattagttgtgtcagcgtgttattgtccgatgtccgtgtc 17835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 21374706 - 21374807
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtcc-gtgtccgcatccgcatccgtgctt 236  Q
    |||||||||||||||| || ||||||| | |||||||||||||||| |||||||| |||||||||||| |||||| |||||||  |||| ||||||||||    
T  21374706 gacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgttagtgtcc-gtgtccggtgtccgtgtccgtatccgtgctt 21374804  T
Q  237 cat 239  Q
    |||    
T  21374805 cat 21374807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 206
Target Start/End: Original strand, 19536366 - 19536473
Alignment:
Q  95 aagcacggacactcctcggattagacgtgtccgataggacaacgacacttgtaattacattgtattatgtgactttt-tcaaattattagttgtgtcggt 193  Q
    ||||| |||||||||||||||||| |||||||||     || ||||||||||||||||| || ||||||||| |||| |||||||||||||||||||||     
T  19536366 aagcatggacactcctcggattaggcgtgtccga-----caccgacacttgtaattacactgaattatgtgatttttttcaaattattagttgtgtcggc 19536460  T
Q  194 gtgttagtgtccg 206  Q
    |||| | ||||||    
T  19536461 gtgtcattgtccg 19536473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 37559035 - 37558949
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtccg 219  Q
    |||| |||||||||||||||||||| ||||||||| |||| ||||||||||| |||||||| |||| ||||||| |||||||| ||||    
T  37559035 gacaccgacacttgtaattacattgaattatgtgatttttacaaattattagctgtgtcggcgtgtcagtgtcc-gtgtccgtatccg 37558949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 206
Target Start/End: Original strand, 20539637 - 20539749
Alignment:
Q  95 aagcacggacactcctcggattagacgtgtc-cgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggt 193  Q
    ||||||||||||||||||||| || |||||| ||  | |||| ||||||||||||||||| |  ||||| ||| |||||||||||||||| |||||||      
T  20539637 aagcacggacactcctcggatcaggcgtgtctcgccacgacaccgacacttgtaattacactaaattatatgattttttcaaattattagctgtgtcgac 20539736  T
Q  194 gtgttagtgtccg 206  Q
    |||| ||||||||    
T  20539737 gtgtcagtgtccg 20539749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 15657922 - 15657848
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||| ||||||||||| || ||||||||| |||| |||||||||||||| ||||| |||||||||||||    
T  15657922 gacaccgacatttgtaattacactgaattatgtgatttttacaaattattagttgagtcggcgtgttagtgtccg 15657848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 30717531 - 30717605
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||||||||| || ||||||||| |||||||||||||||| | ||||||| ||| ||||||||    
T  30717531 gacatcgacacttgtaattacactgaattatgtgattttttcaaattattagctttgtcggtttgtcagtgtccg 30717605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 15972931 - 15972857
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||||||||| || ||| ||| | ||||||||||||||| ||||||||| |||| ||||||||    
T  15972931 gacaccgacacttgtaattacactgaattgtgtaattttttcaaattattaattgtgtcggcgtgtcagtgtccg 15972857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 18422021 - 18421947
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||||||||| || |||||||||  |||| ||||||||| ||||||||| |||| ||||||||    
T  18422021 gacaccgacacttgtaattacactgaattatgtgatatttttaaattattaattgtgtcggcgtgtcagtgtccg 18421947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 30335475 - 30335401
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||| ||||||||||| |  ||||||| | ||||||||||||||||||||||||| ||| |||||||||    
T  30335475 gacaccgacatttgtaattacactaaattatgtcattttttcaaattattagttgtgtcggcgtgctagtgtccg 30335401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 6940308 - 6940239
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    ||||||||||||||||| |  ||||||| ||||||| |||||||||| |||||||| |||| ||||||||    
T  6940308 cgacacttgtaattacacttaattatgtaactttttaaaattattagctgtgtcggcgtgtcagtgtccg 6940239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 18841014 - 18841087
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtcc 205  Q
    |||| ||||||||||||||||| |  ||||||| | ||||||||||||||||||||||| | |||| |||||||    
T  18841014 gacaccgacacttgtaattacacttaattatgtaattttttcaaattattagttgtgtcagcgtgtcagtgtcc 18841087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 23718079 - 23718010
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||||| | |||||||| || ||||||||||||| ||||||||||||  |||||||||||| ||||||||    
T  23718079 cgacacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccg 23718010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 24105751 - 24105682
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||||| | |||||||| || ||||||||||||| ||||||||||||  |||||||||||| ||||||||    
T  24105751 cgacacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccg 24105682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 30404856 - 30404925
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    ||||||||||||||||| || ||||||||| |||||||||||||||   ||||||| |||| ||||||||    
T  30404856 cgacacttgtaattacactgaattatgtgattttttcaaattattaaccgtgtcggcgtgtcagtgtccg 30404925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 20473380 - 20473320
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcgg 192  Q
    |||| ||||||||||||||||| || ||||| ||| ||||| |||||||||||||||||||    
T  20473380 gacatcgacacttgtaattacactgaattatatgagttttttaaattattagttgtgtcgg 20473320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 974805 - 974746
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcg 191  Q
    |||| ||||||||||||||||| || || ||||||  |||||||||||||||||||||||    
T  974805 gacaccgacacttgtaattacactgaataatgtgatcttttcaaattattagttgtgtcg 974746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 37419793 - 37419714
Alignment:
Q  140 cacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtccg 219  Q
    |||||||||||||| || ||| ||||| |||||||||||||| |   |||||| |||| |||||||||||||||| ||||    
T  37419793 cacttgtaattacactgaattttgtgattttttcaaattatttgccatgtcggcgtgtcagtgtccggtgtccgtatccg 37419714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 2438720 - 2438778
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtc 190  Q
    |||| ||||||||||||||||| || ||||||||| ||||| |||||||||| ||||||    
T  2438720 gacaccgacacttgtaattacactgaattatgtgattttttgaaattattagctgtgtc 2438778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 26769569 - 26769471
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt-----tagtgtccggtgtccgtgtccgcatccg 225  Q
    |||| |||||||||||||||||    || ||||||  |||||||||||||||||||||||| ||||     | |||||||||||||||||||| |||||    
T  26769569 gacaccgacacttgtaattacaccagataatgtgatattttcaaattattagttgtgtcggcgtgtctgtgtcgtgtccggtgtccgtgtccgtatccg 26769471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 12668424 - 12668489
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||| |||||||| |||||||| || ||||||| | |||||||||||||||||| |||||| ||||    
T  12668424 gacaccgacacttataattacactgaattatgtcattttttcaaattattagttatgtcggcgtgt 12668489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 12940941 - 12940994
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtc 190  Q
    ||||| ||||||||||| || ||||| ||| |||||||||||||||||||||||    
T  12940941 cgacatttgtaattacactgaattatatgattttttcaaattattagttgtgtc 12940994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 38117167 - 38117232
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    |||||||||||||||  | | ||||||| |||||||||||||||| |||||||| |||| ||||||    
T  38117167 acacttgtaattacaccgaagtatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 38117232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 36756345 - 36756417
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    |||| |||||||| |||||||| || ||||||| | || |||||||||||||||||||||  |||| ||||||    
T  36756345 gacaccgacacttataattacactgaattatgttatttcttcaaattattagttgtgtcgacgtgtcagtgtc 36756417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 5040792 - 5040730
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtga--ctttttcaaattattagttgtgtcgg 192  Q
    |||| |||||||||||||||||||| |||||||||   |||||||||||||||| ||| ||||    
T  5040792 gacaccgacacttgtaattacattgaattatgtgattttttttcaaattattagctgtatcgg 5040730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 14996213 - 14996330
Alignment:
Q  121 gtgtccgataggacaacgacacttgtaattacattgtattatgtgactttt-tcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtccg 219  Q
    |||||||| | |||| ||||||||||||||||| |  ||||| ||| |||| |||||||||||| ||||||||  ||| ||||||| |||| | |||| |    
T  14996213 gtgtccgacaagacaccgacacttgtaattacactaaattatatgatttttttcaaattattagctgtgtcggcttgtcagtgtcc-gtgt-catgtctg 14996310  T
Q  220 catccgcatccgtgcttcat 239  Q
    | |||| |||||||||||||    
T  14996311 cgtccgtatccgtgcttcat 14996330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 23058443 - 23058518
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtga-ctttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||||||||| || |||||||||  ||||||||||||||| |||||| || |||| | ||||||    
T  23058443 gacaccgacacttgtaattacactggattatgtgatttttttcaaattattaattgtgtgggcgtgtcactgtccg 23058518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 11223864 - 11223922
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtc 190  Q
    |||| ||||||||||||||||| || ||||||| | ||||||||| |||||| ||||||    
T  11223864 gacaccgacacttgtaattacactgaattatgttattttttcaaaatattagctgtgtc 11223922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 29176501 - 29176566
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    |||||| |||||||| || |||||||||| ||||||||||||||  |||||| | |||| ||||||    
T  29176501 acacttataattacactgaattatgtgaccttttcaaattattaactgtgtctgcgtgtaagtgtc 29176566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 34691777 - 34691857
Alignment:
Q  98 cacggacactcctcggattagacgtgtccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattag 183  Q
    ||||||||||||||||||||| |||||||||     || |||||| | |||||||| || ||||| ||| ||| ||||||||||||    
T  34691777 cacggacactcctcggattaggcgtgtccga-----caccgacacatataattacactgaattatatgattttatcaaattattag 34691857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 34714189 - 34714269
Alignment:
Q  98 cacggacactcctcggattagacgtgtccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattag 183  Q
    ||||||||||||||||||||| |||||||||     || |||||| | |||||||| || ||||| ||| ||| ||||||||||||    
T  34714189 cacggacactcctcggattaggcgtgtccga-----caccgacacatataattacactgaattatatgattttatcaaattattag 34714269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 21091775 - 21091707
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||||||||||||||| || | ||||| | ||| | ||||||||||  |||||||||||| ||||||||    
T  21091775 gacacttgtaattacactgaagtatgttattttcttaaattattagcggtgtcggtgtgtcagtgtccg 21091707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 22652034 - 22651960
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||||||| |||| ||||||||| |||||||||||||||| |||||||| |||| ||||||||    
T  22652034 gacaccgacacttgtaattatattgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccg 22651960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 36450762 - 36450841
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtccg 219  Q
    ||||||||||||||| || ||| ||||| ||||||||||||||||||||||||| |||| ||||||| |||||||| ||||    
T  36450762 acacttgtaattacactgaattctgtgattttttcaaattattagttgtgtcggcgtgtcagtgtcc-gtgtccgtatccg 36450841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 30271300 - 30271371
Alignment:
Q  140 cacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtc 211  Q
    |||||||||||||| || ||||||||| |||||||||| ||||| |||||||| |||| |||||||||||||    
T  30271300 cacttgtaattacactgcattatgtgattttttcaaatgattagctgtgtcggcgtgtcagtgtccggtgtc 30271371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 15816130 - 15816204
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| |||||||| |||||||| |  ||||||||| ||||||||||||||||||||||||| |||| ||||||||    
T  15816130 gacaccgacacttataattacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccg 15816204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 4298887 - 4298956
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagt 201  Q
    |||| |||||||||||||||||||  ||||||||| |||||||||||||||  |||||||| ||||||||    
T  4298887 gacaccgacacttgtaattacattaaattatgtgattttttcaaattattaactgtgtcggcgtgttagt 4298956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 25566899 - 25566789
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt---tagtgtccggtgtccgtgtccgcatccgcat 228  Q
    |||| ||||||||||||||||| || ||||||||| |||||||||||||||| |||||| |||| |   |  ||||||||||| |||||   ||||| ||    
T  25566899 gacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcagtgtctgtgtcatgtccggtgtctgtgtctatatccgtat 25566800  T
Q  229 ccgtgcttcat 239  Q
    |||||||||||    
T  25566799 ccgtgcttcat 25566789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 29447111 - 29447170
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcg 191  Q
    |||| ||||||||||| |||||||| ||||||||| ||| ||||||||||||||||||||    
T  29447111 gacaccgacacttgtagttacattgaattatgtgattttctcaaattattagttgtgtcg 29447170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 18170483 - 18170557
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||| |||||||||||||| ||||||| | ||||||||||| ||| ||||||||| |||| ||||||||    
T  18170483 gacaccgacatttgtaattacattgaattatgtaattttttcaaatttttaattgtgtcggcgtgtcagtgtccg 18170557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 18634051 - 18634125
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||| |||||||||||||| ||||||| | ||||||||||| ||| ||||||||| |||| ||||||||    
T  18634051 gacaccgacatttgtaattacattgaattatgtaattttttcaaatttttaattgtgtcggcgtgtcagtgtccg 18634125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 22197749 - 22197815
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    |||||||||||||||| |  ||||||||| |||||||||||||||| ||||| || |||||||||||    
T  22197749 gacacttgtaattacactaaattatgtgaatttttcaaattattagctgtgttggcgtgttagtgtc 22197815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 24613578 - 24613509
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtg 202  Q
    |||| ||||||||||||||||| |  ||||||||| |||||||||||||||| ||||||||||||| ||||    
T  24613578 gacaccgacacttgtaattacacttaattatgtga-tttttcaaattattagctgtgtcggtgtgtcagtg 24613509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 4948710 - 4948657
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagtt 185  Q
    |||| ||||||||||||||||| || ||||||||| ||||||||||||||||||    
T  4948710 gacaccgacacttgtaattacactgaattatgtgattttttcaaattattagtt 4948657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 13436965 - 13437038
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtcc 205  Q
    |||| |||||||||| |||||  || ||||||||| |||||||||||||||| |||||||| |||| |||||||    
T  13436965 gacaccgacacttgttattaccatgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtcc 13437038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 25192353 - 25192422
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||||||| |||||| | || ||||||| |||||||||||||||||| |||||||| |||| ||||||||    
T  25192353 cgacacttataattatactgaattatgtcactttttcaaattattagctgtgtcggcgtgtcagtgtccg 25192422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 29510310 - 29510379
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    ||||||||||||||| | || ||| ||||| |||||||||||||||| |||||||| |||| ||||||||    
T  29510310 cgacacttgtaattatactgaattttgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccg 29510379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 2572057 - 2572116
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcg 191  Q
    |||| ||||||||||||||||| |  ||||||||| |||||||||||||||| |||||||    
T  2572057 gacaccgacacttgtaattacactaaattatgtgattttttcaaattattaggtgtgtcg 2572116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 8343030 - 8342967
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgt 195  Q
    |||| ||||||||||||||||| |  ||||||||| |||||||||||||||| | |||||||||    
T  8343030 gacaccgacacttgtaattacactaaattatgtgattttttcaaattattagctatgtcggtgt 8342967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 8343368 - 8343309
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||||||||||||||| |  ||||||||| |||||||||||||||| | |||||||||||    
T  8343368 gacacttgtaattacactaaattatgtgattttttcaaattattagctatgtcggtgtgt 8343309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 5813650 - 5813576
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||| ||||| |  | |||||||||||||||||||||||| |||||||| ||||  |||||||    
T  5813650 gacaccgacacttgtatttacactaaaatatgtgactttttcaaattattagctgtgtcggcgtgtccgtgtccg 5813576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 20873127 - 20873053
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||||||||| |  ||||||||| |||||||||||||||  | |||||| |||| ||||||||    
T  20873127 gacaccgacacttgtaattacactaaattatgtgattttttcaaattattatctatgtcggcgtgtcagtgtccg 20873053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 21465463 - 21465391
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgt 214  Q
    |||||||||||||||| | ||||| ||| |||||||||||||||| |||||| |||   | |||||||||||||||    
T  21465463 acacttgtaattacatcgaattatatgattttttcaaattattagctgtgtccgtg---tcgtgtccggtgtccgt 21465391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 22596045 - 22595981
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgt 203  Q
    ||||||||||||||| || ||||||| | ||||| |||||||||| |||||||| |||| |||||    
T  22596045 acacttgtaattacactgaattatgttatttttttaaattattagctgtgtcggcgtgtcagtgt 22595981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 41831945 - 41832001
Alignment:
Q  136 acgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcgg 192  Q
    |||||||||||| ||||| || ||||||||| |||||||||||||||  ||||||||    
T  41831945 acgacacttgtagttacactgaattatgtgattttttcaaattattaactgtgtcgg 41832001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 18407772 - 18407717
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcgg 192  Q
    ||||||||||||||||| || ||||||||| |||||  ||||||||| ||||||||    
T  18407772 cgacacttgtaattacactgaattatgtgatttttttgaattattagctgtgtcgg 18407717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 126
Target Start/End: Complemental strand, 22652101 - 22652070
Alignment:
Q  95 aagcacggacactcctcggattagacgtgtcc 126  Q
    ||||||||||||||||||||||||||||||||    
T  22652101 aagcacggacactcctcggattagacgtgtcc 22652070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 28745556 - 28745505
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattag 183  Q
    |||| ||||| ||||| |||||||| ||||||||| ||||||||||||||||    
T  28745556 gacatcgacatttgtagttacattgaattatgtgaatttttcaaattattag 28745505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 31557054 - 31556985
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtg 202  Q
    |||| ||| ||||||||||||| || ||||||||| |||||||||||||||  |||||||| |||| ||||    
T  31557054 gacaccgaaacttgtaattacactgaattatgtga-tttttcaaattattaactgtgtcggcgtgtcagtg 31556985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 124
Target Start/End: Complemental strand, 11803384 - 11803355
Alignment:
Q  95 aagcacggacactcctcggattagacgtgt 124  Q
    ||||||||||||||||||||||||||||||    
T  11803384 aagcacggacactcctcggattagacgtgt 11803355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 30077394 - 30077439
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattag 183  Q
    |||||||||||||||| || |||||||||  |||||||||||||||    
T  30077394 gacacttgtaattacactgaattatgtgatgttttcaaattattag 30077439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 17468516 - 17468568
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcg 191  Q
    |||||||||||||||  | ||||||||| |||| ||||||||| |||||||||    
T  17468516 acacttgtaattacaccgcattatgtgatttttacaaattatttgttgtgtcg 17468568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 24196628 - 24196672
Alignment:
Q  162 tgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    ||||| ||||||||||||||||||||||||| ||||  |||||||    
T  24196628 tgtgattttttcaaattattagttgtgtcggcgtgtcggtgtccg 24196672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 31109462 - 31109494
Alignment:
Q  94 aaagcacggacactcctcggattagacgtgtcc 126  Q
    ||||||||||||||||||||||||| |||||||    
T  31109462 aaagcacggacactcctcggattaggcgtgtcc 31109494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 31236583 - 31236643
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||||| | ||||||||||| ||||||||| ||| ||||||||||||  ||||||| ||||    
T  31236583 cgacacatataattacattgaattatgtgattttctcaaattattagcagtgtcggcgtgt 31236643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 34897175 - 34897092
Alignment:
Q  95 aagcacggacactcctcggattagacgtgtccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattag 183  Q
    |||||||||||||||||| |||| | ||||||||     || |||||| | |||||||| || ||||||||| ||| ||||||||||||    
T  34897175 aagcacggacactcctcgaattacatgtgtccga-----catcgacacatataattacactgaattatgtgattttctcaaattattag 34897092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 36934714 - 36934654
Alignment:
Q  146 taattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||||||| || ||||||||| |||||| |||||||||  ||||||  |||||||||||||    
T  36934714 taattacaatgaattatgtgattttttcgaattattagcggtgtcgacgtgttagtgtccg 36934654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 40332244 - 40332200
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattatt 181  Q
    ||||||||||||||||| || ||||||||| ||| ||||||||||    
T  40332244 cgacacttgtaattacactgaattatgtgattttctcaaattatt 40332200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 44067570 - 44067502
Alignment:
Q  136 acgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    ||||||||| |||||||| |||||||||| | ||| |||||||||||   ||||||| |||| ||||||    
T  44067570 acgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtc 44067502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 34910382 - 34910289
Alignment:
Q  125 ccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtccg 219  Q
    |||||| |||| |||| |||||||||||| || ||||||||| ||||||||||||||||||||||||| ||| | ||||| ||||||||| ||||    
T  34910382 ccgatacgacaccgactcttgtaattacactgaattatgtgattttttcaaattattagttgtgtcggcgtg-tcgtgtctggtgtccgtatccg 34910289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 25948851 - 25948939
Alignment:
Q  95 aagcacggacactcctcggattagacgtgtccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattag 183  Q
    ||||||||||| |||| |||||| |||||||||| | |||| | |||||| |||||||| || ||||||||| ||||||||||||||||    
T  25948851 aagcacggacattccttggattacacgtgtccgacacgacaccaacacttataattacactgaattatgtgattttttcaaattattag 25948939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 10955010 - 10954939
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgt 203  Q
    |||| |||||||||| |||||| || ||||||||| ||||||||||||||||||||||||| |||| |||||    
T  10955010 gacaccgacacttgtgattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgt 10954939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 10335287 - 10335361
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||| ||||| |  | ||||||||||||||||||||||||||||||||| |||| ||||||||    
T  10335287 gacaccgacacttgtatttacactaaaatatgtgactttttcaaattattagttgtgtcggcgtgtcagtgtccg 10335361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 55401133 - 55401059
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||||||||| |  ||||||||| ||||||||||||||||||||||||| || | ||||||||    
T  55401133 gacaccgacacttgtaattacactaaattatgtgattttttcaaattattagttgtgtcggcgtatcagtgtccg 55401059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 190
Target Start/End: Original strand, 21256953 - 21257045
Alignment:
Q  95 aagcacggacactcctcggattagacgtgtccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtc 190  Q
    ||||||||||||||||||||||||  ||||||   | || | ||||||||||||||| | || ||||||||| |||||||||||||||| ||||||    
T  21256953 aagcacggacactcctcggattaggtgtgtcc---acgataccgacacttgtaattatactgaattatgtgattttttcaaattattagctgtgtc 21257045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 4987299 - 4987363
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgt 203  Q
    ||||||||||||||| || ||||||||| |||||||||||||||| |||||||| |||| |||||    
T  4987299 acacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 4987363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 14209165 - 14209106
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||||||||||||||| || ||||||||| ||||| ||||||||||||||||||| ||||    
T  14209165 gacacttgtaattacactgaattatgtgattttttaaaattattagttgtgtcggcgtgt 14209106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 20503518 - 20503451
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    ||||||||||||||||| || ||||||| | |||||||||||||| |||||||||| |||| ||||||    
T  20503518 cgacacttgtaattacactgaattatgtcattttttcaaattatttgttgtgtcggcgtgtcagtgtc 20503451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 8587022 - 8587096
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||||||||| |  ||||||||| |||||||||||| ||| |||||||| |||| ||||||||    
T  8587022 gacaccgacacttgtaattacacttaattatgtgattttttcaaattactagatgtgtcggcgtgtcagtgtccg 8587096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 217
Target Start/End: Complemental strand, 25775567 - 25775481
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgact-ttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtc 217  Q
    |||| ||||||||||||||||| || ||||||||| | ||||||||||||||  ||||| || |||| ||||||| |||||||||||    
T  25775567 gacaccgacacttgtaattacactgaattatgtgattattttcaaattattaaatgtgttggcgtgtcagtgtccagtgtccgtgtc 25775481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 28918059 - 28917985
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||||||||| || ||||||||| |||||||||||||||| | |||||| |||| ||| ||||    
T  28918059 gacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctatgtcggcgtgtcagtttccg 28917985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 14216944 - 14216845
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtccgcatccgcatccgtgcttc 237  Q
    |||||||||||||||| || ||||| |||  |||| ||||||||||||||||||  |||| ||||||| |||| |||||| |  ||||||||||||||||    
T  14216944 gacacttgtaattacactgaattatatgatattttaaaattattagttgtgtcgacgtgtcagtgtcc-gtgt-cgtgtctgtgtccgcatccgtgcttc 14216847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 14223073 - 14222974
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtccgcatccgcatccgtgcttc 237  Q
    |||||||||||||||| || ||||| |||  |||| ||||||||||||||||||  |||| ||||||| |||| |||||| |  ||||||||||||||||    
T  14223073 gacacttgtaattacactgaattatatgatattttaaaattattagttgtgtcgacgtgtcagtgtcc-gtgt-cgtgtctgtgtccgcatccgtgcttc 14222976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 21479176 - 21479079
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt-----tagtgtccggtgtccgtgtccgcatcc 224  Q
    |||| ||||||| ||||||||| || ||| ||||| |||||||||||||||| |||||||| ||||     | |||||||||||||||||||| ||||    
T  21479176 gacaccgacactagtaattacactgaattgtgtgattttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtccggtgtccgtgtccgtatcc 21479079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 26508163 - 26508110
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtc 190  Q
    ||||||||||||||||| || ||||||||| |||||||||||||||| ||||||    
T  26508163 cgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 26508110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 28812573 - 28812508
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||| |||||||||||| |||| || ||||||||| || |||||||||||||||||||||| ||||    
T  28812573 gacaccgacacttgtaactacactgaattatgtgatttcttcaaattattagttgtgtcggcgtgt 28812508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 39756294 - 39756188
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccg-tgtccgcatccgcatcc 230  Q
    |||| ||||||||||||||| |||  ||||||||| ||||| ||||||||| || |||||| |||| ||||||  ||||||| |||||| ||||  ||||    
T  39756294 gacaccgacacttgtaattatattaaattatgtgatttttttaaattattaattttgtcggcgtgtcagtgtc--gtgtccgatgtccgtatccatatcc 39756197  T
Q  231 gtgcttcat 239  Q
    |||||||||    
T  39756196 gtgcttcat 39756188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 49651778 - 49651847
Alignment:
Q  123 gtccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcgg 192  Q
    |||||| | |||| ||||||||||||||||| || ||||||||| ||||||||||||||||  |||||||    
T  49651778 gtccgacacgacaccgacacttgtaattacagtgaattatgtgattttttcaaattattagccgtgtcgg 49651847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 195
Target Start/End: Complemental strand, 7928536 - 7928445
Alignment:
Q  99 acggacactcctcggattagacgtgtccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgt 195  Q
    ||||||||||||| |||||| |||||||||     || |||||| | |||||||| || ||||||||| ||||||||||||||||  ||||||||||    
T  7928536 acggacactcctcagattaggcgtgtccga-----caccgacacatataattacactgaattatgtgattttttcaaattattagcggtgtcggtgt 7928445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 10318064 - 10318119
Alignment:
Q  161 atgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtc 217  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||| |||||||||||    
T  10318064 atgtgactttttcaaattattagctgtgtcggcgtgtcagtgtcc-gtgtccgtgtc 10318119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 239
Target Start/End: Complemental strand, 14747610 - 14747513
Alignment:
Q  142 cttgtaattacattgtattatgtgacttttt-caaattattagttgtgtcggtgtgttagtgtccggtgtcc-gtgtccgcatccgcatccgtgcttcat 239  Q
    |||||||||||| |  ||||||||| ||||| ||||||||||| |||||||| |||| ||||||  |||||| ||||||| ||||| |||||||||||||    
T  14747610 cttgtaattacactaaattatgtgatttttttcaaattattagctgtgtcggcgtgtcagtgtc--gtgtccggtgtccgtatccgtatccgtgcttcat 14747513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 14829747 - 14829676
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    |||| ||||||||||||||||  || ||||||||| |||||||||||||||| |||||||| |||| ||||||    
T  14829747 gacaccgacacttgtaattaccatgaattatgtga-tttttcaaattattagctgtgtcggcgtgtcagtgtc 14829676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 16000017 - 16000089
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    |||| ||||||||||| ||||| || ||||||| | ||||| ||||||||||||||||||| |||| ||||||    
T  16000017 gacaccgacacttgtagttacactgaattatgttatttttttaaattattagttgtgtcggcgtgtcagtgtc 16000089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 21305290 - 21305218
Alignment:
Q  146 taattacattgtattatgtgacttttt-caaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtc 217  Q
    ||||||||||  ||||||||| ||||| |||||||||||  ||||||| ||||||||||| ||||||||||||    
T  21305290 taattacatttaattatgtgatttttttcaaattattagaggtgtcggcgtgttagtgtctggtgtccgtgtc 21305218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 35994743 - 35994798
Alignment:
Q  136 acgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcgg 192  Q
    |||||||||||||||||| || ||||||||| |||||||||||||||| ||||||||    
T  35994743 acgacacttgtaattacactgaattatgtga-tttttcaaattattagctgtgtcgg 35994798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 1509597 - 1509534
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgt 195  Q
    |||| ||||||||||||||||| |  ||||||||| |||||||||||||||| |||||| ||||    
T  1509597 gacaccgacacttgtaattacactaaattatgtgattttttcaaattattagctgtgtcagtgt 1509534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 10268493 - 10268560
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtcc 205  Q
    |||||||||||||||| |  ||||||||| |||||||||||||||  |||||||| |||| |||||||    
T  10268493 gacacttgtaattacactaaattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtcc 10268560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 14832151 - 14832092
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||||||||||||||||||  |||||||| |||||||||||||||| ||| |||| ||||    
T  14832151 gacacttgtaattacattgagttatgtgattttttcaaattattagctgtatcggcgtgt 14832092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 51206354 - 51206417
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgt 195  Q
    |||| ||||||||||| ||||| || ||||||||| |||||||||||||||| |||||| ||||    
T  51206354 gacaccgacacttgtatttacactgaattatgtgattttttcaaattattagctgtgtcagtgt 51206417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 8412972 - 8413029
Alignment:
Q  158 attatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtg 215  Q
    ||||||||  ||| |||||||||||||||||||||| ||| | |||||||||||||||    
T  8412972 attatgtgtttttctcaaattattagttgtgtcggtctgtcaatgtccggtgtccgtg 8413029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 32400715 - 32400798
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtccgcatcc 224  Q
    ||||||||||||||||    ||||||| |  ||||||||||||||| |||||||  |||| |||||||||||| |||||||| ||||    
T  32400715 gacacttgtaattacaa---attatgtaatcttttcaaattattagctgtgtcgccgtgtcagtgtccggtgttcgtgtccgtatcc 32400798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 41961651 - 41961723
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    |||| |||||||||||||||||  | || ||||||  |||||||||||||||||||| ||| |||| ||||||    
T  41961651 gacaccgacacttgtaattacaccgaataatgtgatattttcaaattattagttgtgacggcgtgtcagtgtc 41961723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 750619 - 750678
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcg 191  Q
    |||| |||||||||||||| ||  | |||||||||  |||||||||||||||||||||||    
T  750619 gacaccgacacttgtaattgcagcgaattatgtgatattttcaaattattagttgtgtcg 750678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 126
Target Start/End: Complemental strand, 34910431 - 34910400
Alignment:
Q  95 aagcacggacactcctcggattagacgtgtcc 126  Q
    ||||||||||||||||||||||||||||||||    
T  34910431 aagcacggacactcctcggattagacgtgtcc 34910400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 15796295 - 15796369
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||| ||||||||||| || ||||| ||| |||||||||||||||  |||||||| |||| | ||||||    
T  15796295 gacaccgacaattgtaattacactgaattatatgattttttcaaattattaactgtgtcggcgtgtcattgtccg 15796369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 24205046 - 24205116
Alignment:
Q  136 acgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    ||||||||| |||||||| |||||||||| | ||| |||||||||||   ||||||| |||| ||||||||    
T  24205046 acgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccg 24205116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 26492206 - 26492280
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||| ||||||||||||| || ||| | ||| |||||||||||||||| | |||||| |||| ||||||||    
T  26492206 gacaccgatacttgtaattacactgaattgtatgattttttcaaattattagctctgtcggcgtgtcagtgtccg 26492280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 40052364 - 40052318
Alignment:
Q  158 attatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    ||||||||| |||||||||||||||| |||||||| |||| ||||||    
T  40052364 attatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 40052318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 14979224 - 14979179
Alignment:
Q  147 aattacattgtattatgtgactttttcaaattattagttgtgtcgg 192  Q
    ||||||| || ||||||||| |||||||||||||||| ||||||||    
T  14979224 aattacactgaattatgtgattttttcaaattattagctgtgtcgg 14979179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 34185124 - 34185189
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||| ||||||||||||||||| || ||| ||||| ||||| ||||||||||  ||||||| ||||    
T  34185124 gacaccgacacttgtaattacactgaattgtgtgattttttgaaattattagccgtgtcggcgtgt 34185189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 3164033 - 3164085
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcg 191  Q
    ||||||||  ||||| || ||||||||| |||||||||||||||| |||||||    
T  3164033 acacttgttcttacactgaattatgtgattttttcaaattattagctgtgtcg 3164085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 17005625 - 17005693
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtcc 205  Q
    |||||||| |||||||| || ||||| ||| ||| ||||||||||||| |||| |||| || |||||||    
T  17005625 cgacacttataattacactgaattatatgattttatcaaattattagtggtgttggtgagtcagtgtcc 17005693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 27505304 - 27505244
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcgg 192  Q
    |||| ||||||||||||||||| |  ||||||||| ||||  |||||||||| ||||||||    
T  27505304 gacaccgacacttgtaattacacttaattatgtgatttttaaaaattattagctgtgtcgg 27505244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 29508497 - 29508437
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||||| | |||||||| || ||||| ||| ||||||||||||||||| || |||||||||    
T  29508497 cgacacatataattacactgaattatatgattttttcaaattattagtggtatcggtgtgt 29508437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 239
Target Start/End: Complemental strand, 46771 - 46628
Alignment:
Q  95 aagcacggacactcctcggattagacgtgtccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtg 194  Q
    |||||||||||||||||||||||| ||||||      |||| ||||| ||||||||||| || ||||||||| |||||||||||||||  |||||||| |    
T  46771 aagcacggacactcctcggattaggcgtgtc------gacaccgacatttgtaattacactgaattatgtgattttttcaaattattaactgtgtcggcg 46678  T
Q  195 tgttagtgtccg----gtgtccg-tgtccgcatccgcatccgtgcttcat 239  Q
    ||| | ||||||    ||||||| ||||||  |||| |||||||||||||    
T  46677 tgtcattgtccgtgtcgtgtccgatgtccgtgtccgtatccgtgcttcat 46628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 51862 - 51795
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    ||||||||||||||| || ||||||||| |||||||||||||||| |||||||| |||| ||||||||    
T  51862 acacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccg 51795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 14580 - 14523
Alignment:
Q  140 cacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||||||||||||| || ||||||||| ||||||||||||||||||||||||| ||||    
T  14580 cacttgtaattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgt 14523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 178825 - 178894
Alignment:
Q  138 gacacttgtaattacattgtattatg-tgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||||||||||||||| || |||||| ||| ||||||||||||||||||||||||| |||| ||||||||    
T  178825 gacacttgtaattacactgaattatgatgattttttcaaattattagttgtgtcggcgtgtcagtgtccg 178894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 20224 - 20156
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||||||||||||||| || ||||||||| |||||||||||||||| |||||||| |||| | ||||||    
T  20224 gacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccg 20156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 13458 - 13384
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| |||| ||||||||| || || ||||||||| ||| ||||||||||||||||||||| |||| ||||||||    
T  13458 gacaccgacccttgtaattgcactgaattatgtgattttctcaaattattagttgtgtcggcgtgtcagtgtccg 13384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 21869 - 21943
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| |||| ||||||||| || || ||||||||| ||| ||||||||||||||||||||| |||| ||||||||    
T  21869 gacaccgacccttgtaattgcactgaattatgtgattttctcaaattattagttgtgtcggcgtgtcagtgtccg 21943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 225273 - 225343
Alignment:
Q  136 acgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    ||||||||| ||||||||||||||||||| | ||| |||||||||||  |||||||| |||| ||||||||    
T  225273 acgacacttataattacattgtattatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtccg 225343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 19626 - 19562
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    ||||||||||||||| || ||||||||| |||||||||||||||||||| |||| |||| ||||||    
T  19626 acacttgtaattacactgaattatgtga-tttttcaaattattagttgtatcggcgtgtcagtgtc 19562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 8067 - 8003
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||| |||||||| |||||||| |||||||| ||| ||||||||||||||||||||||||| ||||    
T  8067 gacaccgacactt-taattacactgtattatatgattttttcaaattattagttgtgtcggcgtgt 8003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 23828 - 23740
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtga-ctttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtccg 219  Q
    |||| ||||||||||||||||| || |||||||||  |||||||||||||||  |||| | |||||| |||||||||||| ||| ||||    
T  23828 gacaccgacacttgtaattacactgaattatgtgatttttttcaaattattaactgtgacagtgtgtcagtgtccggtgttcgtatccg 23740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 4891 - 4953
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttc-aaattattagttgtgtcggtgtgttag 200  Q
    ||||||||||||||| || ||||||||| |||||  |||||||||| ||||||||||||||||    
T  4891 acacttgtaattacactgaattatgtgattttttttaaattattagctgtgtcggtgtgttag 4953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 463 - 537
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||||||||| || ||| ||||| ||||||||||||||||  ||||||| || | ||||||||    
T  463 gacaccgacacttgtaattacactgaattttgtgattttttcaaattattagcagtgtcggcgtatcagtgtccg 537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 8856 - 8782
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| ||||||||||||||||| |  || || ||| |||||||||||||||| |||||||| |||| ||||||||    
T  8856 gacaccgacacttgtaattacactaaataatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccg 8782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 10509 - 10546
Alignment:
Q  169 ttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  10509 ttttcaaattattagctgtgtcggtgtgttagtgtccg 10546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 92859 - 92791
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||||||||||||||| || ||||||| | ||| ||||||||||||  ||||||| |||| ||||||||    
T  92859 gacacttgtaattacactgaattatgtaattttctcaaattattagcggtgtcggcgtgtcagtgtccg 92791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 23490 - 23373
Alignment:
Q  120 cgtgtccgataggacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccggtgtccgtgtccg 219  Q
    ||||||||| | |||| |||||||| |||||||| || ||||||||| |||||  | ||||||  |||||||| |||| |||||| | |||| |||||||    
T  23490 cgtgtccgacacgacaccgacacttataattacactgaattatgtgatttttttgagttattatctgtgtcggcgtgtcagtgtctg-tgtc-gtgtccg 23393  T
Q  220 catccgcatccgtgcttcat 239  Q
      |||| |||||||||||||    
T  23392 tgtccgtatccgtgcttcat 23373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 130535 - 130480
Alignment:
Q  137 cgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcgg 192  Q
    ||||||||||||||||| || ||||||||| ||||||||| |||||  ||||||||    
T  130535 cgacacttgtaattacactgaattatgtgattttttcaaactattaactgtgtcgg 130480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 7319 - 7377
Alignment:
Q  139 acacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    |||||| |||||||| |  ||||||||| |||| |||||||||||||||||||| ||||    
T  7319 acacttataattacactaaattatgtgatttttccaaattattagttgtgtcggcgtgt 7377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 33375 - 33429
Alignment:
Q  143 ttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgt 197  Q
    ||||||||||| || ||||||| | |||||||||||||||| |||||||| ||||    
T  33375 ttgtaattacactgaattatgttattttttcaaattattagctgtgtcggcgtgt 33429  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 241652 - 241578
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtccg 206  Q
    |||| |||||||  |||||||| |  ||||||||| |||| ||||||||||| |||||||| |||| ||||||||    
T  241652 gacaccgacactcataattacactaaattatgtgatttttccaaattattagctgtgtcggcgtgtcagtgtccg 241578  T

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Target: scaffold0450 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 8636 - 8696
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcgg 192  Q
    |||| ||||| ||||||||| |  | |||||||||  ||||||||||||||||||||||||    
T  8636 gacaccgacatttgtaattataccgaattatgtgatattttcaaattattagttgtgtcgg 8696  T

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Target: scaffold0136 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 3856 - 3900
Alignment:
Q  138 gacacttgtaattacattgtattatgtgactttttcaaattatta 182  Q
    |||||||||||||||| || ||||||||| ||||| |||||||||    
T  3856 gacacttgtaattacactgaattatgtgatttttttaaattatta 3900  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 135313 - 135385
Alignment:
Q  132 gacaacgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggtgtgttagtgtc 204  Q
    |||| |||||| | ||||||||  | ||||||||| ||| ||||||||||||  ||||||||||||| |||||    
T  135313 gacaccgacacatataattacacagaattatgtgattttctcaaattattagcagtgtcggtgtgttggtgtc 135385  T

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