View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8344_low_15 (Length: 228)

Name: NF8344_low_15
Description: NF8344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8344_low_15
NF8344_low_15
[»] chr7 (19 HSPs)
chr7 (77-210)||(13425288-13425421)
chr7 (26-107)||(39856028-39856109)
chr7 (36-109)||(40196530-40196603)
chr7 (41-110)||(47390852-47390921)
chr7 (41-107)||(1051676-1051742)
chr7 (39-109)||(40282195-40282265)
chr7 (26-107)||(13771109-13771190)
chr7 (28-109)||(36267551-36267632)
chr7 (26-106)||(31571633-31571713)
chr7 (55-110)||(13770945-13771000)
chr7 (77-115)||(17852873-17852911)
chr7 (41-107)||(18231764-18231830)
chr7 (41-115)||(33519226-33519300)
chr7 (41-107)||(37925841-37925907)
chr7 (31-109)||(41496955-41497033)
chr7 (34-107)||(4835479-4835552)
chr7 (48-109)||(25887190-25887251)
chr7 (41-110)||(33655286-33655355)
chr7 (36-109)||(48881556-48881629)
[»] chr5 (15 HSPs)
chr5 (36-107)||(14245088-14245159)
chr5 (46-107)||(13634711-13634772)
chr5 (28-108)||(14684649-14684729)
chr5 (29-107)||(11436939-11437017)
chr5 (46-103)||(2550535-2550592)
chr5 (46-107)||(10476026-10476087)
chr5 (46-109)||(16938477-16938540)
chr5 (36-107)||(26414893-26414964)
chr5 (41-115)||(12035928-12036002)
chr5 (41-111)||(13634889-13634959)
chr5 (41-107)||(40815297-40815363)
chr5 (36-105)||(1657986-1658055)
chr5 (36-109)||(14245219-14245292)
chr5 (46-114)||(10204759-10204827)
chr5 (41-109)||(34980988-34981056)
[»] chr1 (12 HSPs)
chr1 (26-109)||(30010330-30010413)
chr1 (28-109)||(40709290-40709371)
chr1 (26-110)||(35349625-35349709)
chr1 (36-111)||(38509890-38509965)
chr1 (41-114)||(41498397-41498470)
chr1 (41-111)||(35927990-35928060)
chr1 (46-104)||(38510077-38510135)
chr1 (26-107)||(12234010-12234091)
chr1 (36-109)||(40094931-40095004)
chr1 (52-108)||(2858931-2858987)
chr1 (36-112)||(12234183-12234259)
chr1 (41-109)||(33643266-33643334)
[»] chr8 (8 HSPs)
chr8 (41-115)||(31543250-31543324)
chr8 (36-109)||(43732860-43732933)
chr8 (26-101)||(1281149-1281224)
chr8 (26-112)||(7979135-7979221)
chr8 (41-107)||(43732679-43732745)
chr8 (46-107)||(13404976-13405037)
chr8 (36-110)||(3726860-3726934)
chr8 (26-110)||(7503117-7503201)
[»] chr2 (6 HSPs)
chr2 (26-109)||(36347704-36347787)
chr2 (46-110)||(35736172-35736236)
chr2 (46-101)||(31061543-31061598)
chr2 (41-107)||(15224872-15224938)
chr2 (36-110)||(22356177-22356251)
chr2 (41-110)||(41841679-41841748)
[»] chr4 (13 HSPs)
chr4 (39-109)||(46007877-46007947)
chr4 (41-109)||(47433887-47433955)
chr4 (27-110)||(45741887-45741970)
chr4 (46-107)||(31348504-31348565)
chr4 (41-113)||(22920975-22921047)
chr4 (41-113)||(22970752-22970824)
chr4 (34-109)||(34995220-34995295)
chr4 (36-107)||(49735468-49735539)
chr4 (41-107)||(54935067-54935134)
chr4 (46-103)||(14539459-14539516)
chr4 (41-110)||(17182663-17182732)
chr4 (36-109)||(54935242-54935315)
chr4 (41-109)||(44145771-44145839)
[»] chr3 (8 HSPs)
chr3 (26-110)||(28582672-28582756)
chr3 (36-110)||(24253895-24253969)
chr3 (36-107)||(24560217-24560288)
chr3 (36-107)||(34641163-34641234)
chr3 (36-103)||(55428552-55428619)
chr3 (36-110)||(220570-220644)
chr3 (36-90)||(26135970-26136024)
chr3 (41-109)||(24560395-24560463)
[»] scaffold0067 (1 HSPs)
scaffold0067 (36-107)||(39363-39434)
[»] chr6 (8 HSPs)
chr6 (26-107)||(10818229-10818310)
chr6 (36-104)||(9719034-9719102)
chr6 (26-109)||(4097676-4097759)
chr6 (39-90)||(6034248-6034299)
chr6 (36-107)||(14515473-14515544)
chr6 (42-107)||(4097235-4097300)
chr6 (70-110)||(15323222-15323262)
chr6 (70-110)||(15353361-15353401)
[»] scaffold0096 (1 HSPs)
scaffold0096 (41-111)||(6580-6650)
[»] scaffold0198 (1 HSPs)
scaffold0198 (41-113)||(3141-3213)
[»] scaffold0026 (1 HSPs)
scaffold0026 (36-104)||(1175-1243)


Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 13425288 - 13425421
Alignment:
Q  77 ccctcctaaaccctaaatctaaacacaccctaaaggtttccacataacatcttcatgaaattgatttcctgcttcatgggagcctcgggataaaactcta 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13425288 ccctcctaaaccctaaatctaaacacaccctaaaggtttccacataacatcttcatgaaattgatttccttcttcatgggagcctcgggataaaactcta 13425387  T
Q  177 atccatataactcataatcatcattgaacgtcat 210  Q
    ||||||||||||||||||||||||||||||||||    
T  13425388 atccatataactcataatcatcattgaacgtcat 13425421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 39856028 - 39856109
Alignment:
Q  26 tgttatattatccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    ||||||||  |||| |||| |||||||||||||||| |||||  |||||| |||||||||||||| |||| |||||||||||    
T  39856028 tgttatatagtccgtaatttaaaaaagaaaagtaaaccctcccctcccttcccctcctaaaccctcaatccaaacacaccct 39856109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 40196603 - 40196530
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaa 109  Q
    |||| |||||||||| |||||||||| |||||| |||||| |||||| |||||||  ||| |||||||||||||    
T  40196603 tccgtaattcaaaaatgaaaagtaaaccctcctctcccttcccctcccaaaccctccatccaaacacaccctaa 40196530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 47390921 - 47390852
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaa 110  Q
    |||| |||||||||||||||| |||||  |||||| ||||||||| |||| |||| ||||||||||||||    
T  47390921 aatttaaaaaagaaaagtaaaccctccactcccttcccctcctaacccctcaatccaaacacaccctaaa 47390852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 1051676 - 1051742
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    |||| ||||||||||| |||||||||   |||||| |||||||||||||| |||| |||||||||||    
T  1051676 aatttaaaaaagaaaaataaatcctctcctcccttcccctcctaaaccctcaatccaaacacaccct 1051742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 40282265 - 40282195
Alignment:
Q  39 gcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaa 109  Q
    |||||| |||||||||||  ||| |||||| |||||| |||||||||||||| |||| ||||| |||||||    
T  40282265 gcaatttaaaaaagaaaatcaaaccctcctctcccttcccctcctaaaccctcaatccaaacataccctaa 40282195  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 13771109 - 13771190
Alignment:
Q  26 tgttatattatccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    ||||||||  |||| |||| ||||| ||||||||||  |||   |||||| |||||||||||||| ||||||||||||||||    
T  13771109 tgttatatagtccgtaatttaaaaacgaaaagtaaactctcacctcccttcccctcctaaaccctcaatctaaacacaccct 13771190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 36267632 - 36267551
Alignment:
Q  28 ttatattatccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaa 109  Q
    ||||| |||||| |||| ||||||||||| |||  |||||  |||||| ||||||||||||||  ||| |||||||||||||    
T  36267632 ttataatatccgtaatttaaaaaagaaaactaagccctcccctcccttcccctcctaaaccctccatccaaacacaccctaa 36267551  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 31571633 - 31571713
Alignment:
Q  26 tgttatattatccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccc 106  Q
    ||||||||  |||| |||| ||||||||||||||||  ||||  || ||| |||||||||||||| |||| ||||||||||    
T  31571633 tgttatatggtccgtaatttaaaaaagaaaagtaaactctcccctcgcttcccctcctaaaccctcaatccaaacacaccc 31571713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 13771000 - 13770945
Alignment:
Q  55 aagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaa 110  Q
    |||||||||||||  |||||| |||||||||| ||| |||| ||||||||||||||    
T  13771000 aagtaaatcctcccctcccttcccctcctaaatcctcaatccaaacacaccctaaa 13770945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 17852911 - 17852873
Alignment:
Q  77 ccctcctaaaccctaaatctaaacacaccctaaaggttt 115  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  17852911 ccctcctaaaccctcaatctaaacacaccctaaaagttt 17852873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 18231764 - 18231830
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    |||| ||||| ||||||||||||||||  |||||| ||||||||||| ||  ||| |||||||||||    
T  18231764 aatttaaaaatgaaaagtaaatcctcccctcccttcccctcctaaacgctccatccaaacacaccct 18231830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 33519226 - 33519300
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaaggttt 115  Q
    |||| ||| |||||||||||  |||||  |||||| ||||||||||||||  ||| ||||||||||||| |||||    
T  33519226 aatttaaagaagaaaagtaatccctcccctcccttcccctcctaaaccctccatccaaacacaccctaagggttt 33519300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 37925907 - 37925841
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    |||| |||||| |||||| || |||||  |||||| |||||||||||||| |||| |||||||||||    
T  37925907 aatttaaaaaataaaagtgaaccctcccctcccttcccctcctaaaccctcaatccaaacacaccct 37925841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 41497033 - 41496955
Alignment:
Q  31 tattatccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaa 109  Q
    |||| |||| |||| |||||  ||||||||||| |||  |||||| ||||||||||||||  ||| |||||||||||||    
T  41497033 tattgtccgtaatttaaaaataaaaagtaaatcatcccctcccttcccctcctaaaccctccatccaaacacaccctaa 41496955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 4835552 - 4835479
Alignment:
Q  34 tatccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    |||||| |||| |||||||||||||||   | ||  |||||| | |||||||||||| ||||||||||||||||    
T  4835552 tatccgtaatttaaaaaagaaaagtaagcacacccctccctttctctcctaaaccctcaatctaaacacaccct 4835479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 25887251 - 25887190
Alignment:
Q  48 aaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaa 109  Q
    |||||||||  |||||||||  |||||| ||||| |||||||| |||| |||||||||||||    
T  25887251 aaaagaaaaacaaatcctcccctcccttcccctcataaaccctcaatccaaacacaccctaa 25887190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 33655286 - 33655355
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaa 110  Q
    |||| |||||||||||||||| ||||   || ||| |||||||||||||| |||| |||||||| |||||    
T  33655286 aatttaaaaaagaaaagtaaaccctcgcctctcttcccctcctaaaccctcaatccaaacacactctaaa 33655355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 48881629 - 48881556
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaa 109  Q
    |||| |||| |||||||||||||||  | |||  |||||| ||||||||||||||  ||| |||||||||||||    
T  48881629 tccgtaatttaaaaaagaaaagtaagccatcccctcccttcccctcctaaaccctccatccaaacacaccctaa 48881556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 14245159 - 14245088
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    |||| |||| ||||||||||||||||||||||  |||||| |||||||||||||| |||| |||||||||||    
T  14245159 tccgtaatttaaaaaagaaaagtaaatcctcccctcccttcccctcctaaaccctcaatccaaacacaccct 14245088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 13634772 - 13634711
Alignment:
Q  46 aaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    |||||||||||||||| |||||  |||||| |||||||||||||| |||| |||||||||||    
T  13634772 aaaaaagaaaagtaaaccctcccctcccttcccctcctaaaccctcaatccaaacacaccct 13634711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 14684649 - 14684729
Alignment:
Q  28 ttatattatccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacacccta 108  Q
    |||||||  ||| |||| |||||||||||||||  |||||| || ||  ||||||||||||||||||| ||||||||||||    
T  14684649 ttatattgcccgtaattaaaaaaagaaaagtaagccctcctctctctgcccctcctaaaccctaaatccaaacacacccta 14684729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 11437017 - 11436939
Alignment:
Q  29 tatattatccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    |||||| |||| |||| ||||||| |||||||  |||||| |||||| |||||||||||||| |||| |||||| ||||    
T  11437017 tatattgtccgtaatttaaaaaaggaaagtaagccctcctctcccttcccctcctaaaccctcaatccaaacacgccct 11436939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 2550535 - 2550592
Alignment:
Q  46 aaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacaca 103  Q
    |||||||||||||||| |||||  |||||| |||||||||||||| |||| |||||||    
T  2550535 aaaaaagaaaagtaaaccctcccctcccttcccctcctaaaccctcaatccaaacaca 2550592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 10476087 - 10476026
Alignment:
Q  46 aaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    |||||||||||||||| ||||  ||||||| |||||||||||||| |||  |||||||||||    
T  10476087 aaaaaagaaaagtaaaccctctcatcccttcccctcctaaaccctcaattcaaacacaccct 10476026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 16938540 - 16938477
Alignment:
Q  46 aaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaa 109  Q
    |||||||||||  ||| |||||  |||||| |||||||||||||| |||| |||||||||||||    
T  16938540 aaaaaagaaaaacaaaccctcccctcccttcccctcctaaaccctcaatccaaacacaccctaa 16938477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 26414964 - 26414893
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    |||| |||| ||||| |||||||||| |||||  ||||||  ||||||||||||| |||| |||||||||||    
T  26414964 tccgtaatttaaaaacgaaaagtaaaccctcccctcccttctcctcctaaaccctcaatccaaacacaccct 26414893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 12036002 - 12035928
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaaggttt 115  Q
    |||| |||||||||||  || ||||||| |||||| |||||||||||| |  ||| ||||||||||| |||||||    
T  12036002 aatttaaaaaagaaaaacaagtcctcctctcccttcccctcctaaaccatctatccaaacacacccttaaggttt 12035928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 13634889 - 13634959
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaag 111  Q
    |||| ||||| |||||||||  |||||  |||||| |||||||||||||| |||| |||||||||| ||||    
T  13634889 aatttaaaaatgaaaagtaacccctcccctcccttcccctcctaaaccctcaatccaaacacaccccaaag 13634959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 40815363 - 40815297
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    |||| |||||||||||||||||||||   |||||| |||||||||| | | |||| |||||||||||    
T  40815363 aatttaaaaaagaaaagtaaatcctctcttcccttcccctcctaaatcttcaatccaaacacaccct 40815297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 1657986 - 1658055
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacacc 105  Q
    |||| |||| ||||| |||||||||| |||||  |||||| ||||||||||||||  ||| |||||||||    
T  1657986 tccgtaatttaaaaatgaaaagtaaaccctcccctcccttcccctcctaaaccctccatccaaacacacc 1658055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 14245219 - 14245292
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaa 109  Q
    |||| |||| ||||| |||||  ||| |||||  |||||| |||||||||||||| |||| |||||||||||||    
T  14245219 tccgtaatttaaaaatgaaaaacaaaccctcccctcccttcccctcctaaaccctcaatccaaacacaccctaa 14245292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 10204759 - 10204827
Alignment:
Q  46 aaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaaggtt 114  Q
    ||||||||||||||| ||||||  |||||| ||||||||||| ||   || ||||||||||||| ||||    
T  10204759 aaaaaagaaaagtaagtcctcccctcccttcccctcctaaactctctttccaaacacaccctaagggtt 10204827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 34980988 - 34981056
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaa 109  Q
    |||| ||||||||||||||| ||||||  |||||| ||||| ||||||||  ||  |||||||||||||    
T  34980988 aatttaaaaaagaaaagtaagtcctcccctcccttcccctcttaaaccctccattaaaacacaccctaa 34981056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 30010413 - 30010330
Alignment:
Q  26 tgttatattatccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaa 109  Q
    ||||||||  |||| |||| ||| ||||||||||||||||||  |||||| |||||||||||||| |||| |||||||||||||    
T  30010413 tgttatatagtccgtaatttaaacaagaaaagtaaatcctcccctcccttcccctcctaaaccctcaatccaaacacaccctaa 30010330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 40709371 - 40709290
Alignment:
Q  28 ttatattatccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaa 109  Q
    ||||| ||| || |||| ||||||||||||||| ||||||| |||||| ||||| |||||| |||||| |||||||||||||    
T  40709371 ttataatattcgtaatttaaaaaagaaaagtaagtcctcctctcccttcccctcttaaaccttaaatccaaacacaccctaa 40709290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 35349625 - 35349709
Alignment:
Q  26 tgttatattatccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaa 110  Q
    ||||||||  |||| |||| ||||| |||||||||| |||||  |||||| ||||| |||||||| |||| ||||||||||||||    
T  35349625 tgttatatagtccgtaatttaaaaacgaaaagtaaaccctcccctcccttcccctcataaacccttaatccaaacacaccctaaa 35349709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 38509965 - 38509890
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaag 111  Q
    |||| |||| ||||| ||||||| || |||||| |||||| ||||||||||||||  ||| |||||||||||||||    
T  38509965 tccgtaatttaaaaatgaaaagtgaaccctcctctcccttcccctcctaaaccctctatccaaacacaccctaaag 38509890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 41498470 - 41498397
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaaggtt 114  Q
    |||| ||||| |||||||||| |||||  || ||| |||||||||||||| |||| ||||||||||| ||||||    
T  41498470 aatttaaaaacgaaaagtaaaccctcccctcacttcccctcctaaaccctcaatccaaacacacccttaaggtt 41498397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 35927990 - 35928060
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaag 111  Q
    |||| |||||||||||||||||| |||   ||||| |||| |||| |||| |||| |||||||||||||||    
T  35927990 aatttaaaaaagaaaagtaaatcatccctccccttccccttctaagccctcaatccaaacacaccctaaag 35928060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 38510077 - 38510135
Alignment:
Q  46 aaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacac 104  Q
    ||||||||||| |||| |||||  |||||| |||||||||||||| |||| ||||||||    
T  38510077 aaaaaagaaaactaaaccctcccctcccttcccctcctaaacccttaatccaaacacac 38510135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 12234091 - 12234010
Alignment:
Q  26 tgttatattatccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    ||||||||  |||| |||| ||||||||||| |||  ||| |  |||||| |||||||||||||| |||| |||||||||||    
T  12234091 tgttatatagtccgtaatttaaaaaagaaaattaagccctaccctcccttcccctcctaaaccctcaatccaaacacaccct 12234010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 40095004 - 40094931
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaa 109  Q
    |||| |||| ||||| |||||||||| |||||  | |||| ||||||||||||||  ||| |||||||||||||    
T  40095004 tccgtaatttaaaaatgaaaagtaaaccctccccttccttcccctcctaaaccctccatccaaacacaccctaa 40094931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 2858987 - 2858931
Alignment:
Q  52 gaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacacccta 108  Q
    |||||||||| |||||  |||||| ||||||||||||||  ||| ||||||||||||    
T  2858987 gaaaagtaaaccctcccctccctttccctcctaaaccctccatccaaacacacccta 2858931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 12234183 - 12234259
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaagg 112  Q
    |||| |||| ||||| ||||| |||| |||||  |||||| ||||||||||||||  ||| ||||||||| ||||||    
T  12234183 tccgtaatttaaaaatgaaaactaaaccctcccctcccttcccctcctaaaccctccatccaaacacaccataaagg 12234259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 33643334 - 33643266
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaa 109  Q
    |||| |||||| |||||| | || |||  |||||| |||||||||||| | ||||||||||||||||||    
T  33643334 aatttaaaaaataaaagtgagtcatcccttcccttcccctcctaaaccttcaatctaaacacaccctaa 33643266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 31543250 - 31543324
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaaggttt 115  Q
    |||| |||||||||||||||| |||||  |||||| |||||||||||||| |||| |||||||||||||| ||||    
T  31543250 aatttaaaaaagaaaagtaaaccctcccctcccttcccctcctaaaccctcaatcgaaacacaccctaaatgttt 31543324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 43732860 - 43732933
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaa 109  Q
    |||| |||| |||||||||||||||| |||||  |||||| ||||||||||||||  ||| |||||||||||||    
T  43732860 tccgtaatttaaaaaagaaaagtaaaccctcccctcccttcccctcctaaaccctccatccaaacacaccctaa 43732933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 1281224 - 1281149
Alignment:
Q  26 tgttatattatccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaaca 101  Q
    ||||||||  |||| |||| |||||||||||||||| ||||  ||||||| |||||||||||||| |||| |||||    
T  1281224 tgttatatcgtccgtaatttaaaaaagaaaagtaaaccctctcatcccttcccctcctaaaccctcaatccaaaca 1281149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 7979221 - 7979135
Alignment:
Q  26 tgttatattatccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaagg 112  Q
    ||||||||  |||| |||| ||||||||||||||||  ||||| |||||| | || ||||||||| |||| ||||||| ||||||||    
T  7979221 tgttatatagtccgtaatttaaaaaagaaaagtaaactctcctctcccttcctcttctaaaccctcaatccaaacacatcctaaagg 7979135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 43732745 - 43732679
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    |||| |||||| |||||| | ||||||| |||||| |||||||||||||| |||| |||||||||||    
T  43732745 aatttaaaaaataaaagtgagtcctcctctcccttcccctcctaaaccctcaatccaaacacaccct 43732679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 13405037 - 13404976
Alignment:
Q  46 aaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    ||||||||||||||| | |||| ||||||| |||||||||||||| |||| || ||||||||    
T  13405037 aaaaaagaaaagtaatttctcccatcccttcccctcctaaaccctcaatccaaccacaccct 13404976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 3726934 - 3726860
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaa 110  Q
    |||| |||| ||||| ||||| |||| | |||| |||||| ||||||||||||||  ||| ||||||||||||||    
T  3726934 tccgtaatttaaaaatgaaaaataaaccgtcctttcccttcccctcctaaaccctccatccaaacacaccctaaa 3726860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 7503117 - 7503201
Alignment:
Q  26 tgttatattatccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaa 110  Q
    |||||||| ||||  |||| ||||| |||||||||| |||||  |||| | |||||| ||| ||| |||| ||||||||||||||    
T  7503117 tgttatataatccataatttaaaaacgaaaagtaaaccctcccctcccctcccctcccaaagcctcaatccaaacacaccctaaa 7503201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 36347704 - 36347787
Alignment:
Q  26 tgttatattatccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaa 109  Q
    ||||||||  |||| |||| ||||||||||||||||  ||||  |||||| |||||||||||||| |||| |||||||||||||    
T  36347704 tgttatatagtccgtaatttaaaaaagaaaagtaaactctcccttcccttcccctcctaaaccctcaatccaaacacaccctaa 36347787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 35736236 - 35736172
Alignment:
Q  46 aaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaa 110  Q
    ||||||||||| |||  |||||  |||||| |||||||||||||| |||| ||||||||||||||    
T  35736236 aaaaaagaaaattaacccctcccctcccttcccctcctaaaccctcaatccaaacacaccctaaa 35736172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 31061543 - 31061598
Alignment:
Q  46 aaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaaca 101  Q
    ||||||||||||||||||||||  ||| || |||||||||||||| |||| |||||    
T  31061543 aaaaaagaaaagtaaatcctcccctccattcccctcctaaaccctcaatccaaaca 31061598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 15224872 - 15224938
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    |||| |||||||||||||||| | |||  |||||| ||||||||||||||  ||| |||||||||||    
T  15224872 aatttaaaaaagaaaagtaaaccatcccctcccttcccctcctaaacccttgatccaaacacaccct 15224938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 22356177 - 22356251
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaa 110  Q
    |||| |||| ||||||||||| | || |||||  |||||| |||||||||| ||| |||| ||||||||||||||    
T  22356177 tccgtaatttaaaaaagaaaaatgaaccctcccctcccttcccctcctaaatcctcaatccaaacacaccctaaa 22356251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 41841748 - 41841679
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaa 110  Q
    |||| |||||||||||  ||| ||||| ||||||| |||||||||| ||| |||| ||||||||| ||||    
T  41841748 aatttaaaaaagaaaatcaaaccctcccatccctttccctcctaaatcctcaatccaaacacaccttaaa 41841679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 46007877 - 46007947
Alignment:
Q  39 gcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaa 109  Q
    |||||| |||||||||||||||| |||||  |||||| |||||||||||||| |||| |||||||| ||||    
T  46007877 gcaatttaaaaaagaaaagtaaaccctcccctcccttcccctcctaaaccctcaatccaaacacactctaa 46007947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 47433887 - 47433955
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaa 109  Q
    |||| |||||||||||||||| |||||| |||||| |||||||||||| | || | |||||||||||||    
T  47433887 aatttaaaaaagaaaagtaaaccctcctctcccttcccctcctaaaccgtcaacccaaacacaccctaa 47433955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 45741970 - 45741887
Alignment:
Q  27 gttatattatccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaa 110  Q
    |||||||  |||| |||| |||||| ||||||||||||||  || | || |||||||||||||| |||| ||||||||||||||    
T  45741970 gttatatagtccgtaatttaaaaaacaaaagtaaatcctcacattcattcccctcctaaaccctcaatccaaacacaccctaaa 45741887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 31348504 - 31348565
Alignment:
Q  46 aaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    |||||||||||||||| |||||  |||||| ||||||||||| || |||| |||||||||||    
T  31348504 aaaaaagaaaagtaaaccctcccctcccttcccctcctaaactctcaatccaaacacaccct 31348565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 22921047 - 22920975
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaaggt 113  Q
    |||| |||||||||| |||||| ||||| ||  || |||||||||||| | |||| |||||||||||||||||    
T  22921047 aatttaaaaaagaaacgtaaattctcctctctttttccctcctaaaccatcaatccaaacacaccctaaaggt 22920975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 22970752 - 22970824
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaaggt 113  Q
    |||| |||||||||| |||||| ||||| ||  || |||||||||||| | |||| |||||||||||||||||    
T  22970752 aatttaaaaaagaaacgtaaattctcctctctttttccctcctaaaccatcaatccaaacacaccctaaaggt 22970824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 34995220 - 34995295
Alignment:
Q  34 tatccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaa 109  Q
    |||||| |||| ||||||||||||||| || | |  || ||| || ||||||||||| ||||||||||||||||||    
T  34995220 tatccgtaatttaaaaaagaaaagtaagtcttaccctcacttcccttcctaaaccctcaatctaaacacaccctaa 34995295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 49735539 - 49735468
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    |||| |||| ||||| ||||||| || |||||  |||||| |||||||||||||| |||| |||||||||||    
T  49735539 tccgtaatttaaaaatgaaaagtgaaccctcccctcccttcccctcctaaaccctcaatccaaacacaccct 49735468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 54935134 - 54935067
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctccta-tcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    |||| |||||||||||||||| |||||   |||||| |||||||||||||| |||| |||||||||||    
T  54935134 aatttaaaaaagaaaagtaaaccctccccctcccttcccctcctaaaccctcaatccaaacacaccct 54935067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 14539459 - 14539516
Alignment:
Q  46 aaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacaca 103  Q
    |||||| |||||||||||||||| || ||| ||||| |||||||| |||| |||||||    
T  14539459 aaaaaaaaaaagtaaatcctcctgtctcttcccctcttaaaccctcaatccaaacaca 14539516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 17182663 - 17182732
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaa 110  Q
    |||| |||||| |||||||| ||||||  ||| || ||||| |||||||| |||| ||||||||||||||    
T  17182663 aatttaaaaaataaaagtaagtcctcccttcctttcccctcataaaccctcaatccaaacacaccctaaa 17182732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 54935242 - 54935315
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaa 109  Q
    |||| |||| ||||| ||||| |||| |||||  |||||| ||||||||||||||  ||| |||||||||||||    
T  54935242 tccgtaatttaaaaatgaaaaataaaccctcccctcccttcccctcctaaaccctccatccaaacacaccctaa 54935315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 44145839 - 44145771
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaa 109  Q
    |||| |||||| |||||| | ||||||  |||||| |||||||||||| | |||| |||||||||||||    
T  44145839 aatttaaaaaataaaagtgagtcctcccctcccttcccctcctaaaccttgaatccaaacacaccctaa 44145771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 28582672 - 28582756
Alignment:
Q  26 tgttatattatccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaa 110  Q
    ||||||||  |||| |||| |||||||||||||||| |||||  |||||| |||||||||| ||| | || ||||||||||||||    
T  28582672 tgttatatcgtccgtaatttaaaaaagaaaagtaaaccctcccctcccttcccctcctaaatcctcagtccaaacacaccctaaa 28582756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 24253895 - 24253969
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaa 110  Q
    |||| |||| |||||||||||||||||||| |  |||||| |||| |||||||||  ||| ||||||||||||||    
T  24253895 tccgtaatttaaaaaagaaaagtaaatccttccctcccttccccttctaaaccctccatccaaacacaccctaaa 24253969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 24560288 - 24560217
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    |||| |||| |||||||||||  ||| |||||  |||||| |||||||||||||| |||| |||||||||||    
T  24560288 tccgtaatttaaaaaagaaaaacaaaccctcccctcccttcccctcctaaacccttaatccaaacacaccct 24560217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 34641163 - 34641234
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    |||| |||| |||||||||||||||  |||||  |||||| ||||||||||||||  ||| |||||||||||    
T  34641163 tccgtaatttaaaaaagaaaagtaagccctcccctcccttcccctcctaaaccctccatccaaacacaccct 34641234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 55428552 - 55428619
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacaca 103  Q
    |||| |||| ||| |||||||||||||| |||  |||||| |||||||||||||| |||| |||||||    
T  55428552 tccgtaatttaaagaagaaaagtaaatcatcccctcccttcccctcctaaaccctcaatccaaacaca 55428619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 220570 - 220644
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaa 110  Q
    |||| |||| ||||||||||||||||| ||||  ||||||  |||||||||||||  ||| ||||| ||||||||    
T  220570 tccgtaatttaaaaaagaaaagtaaattctcccctcccttctcctcctaaaccctccatccaaacagaccctaaa 220644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 26135970 - 26136024
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccct 90  Q
    |||| |||| |||||||||||||||| |||||  |||||| ||||||||||||||    
T  26135970 tccgtaatttaaaaaagaaaagtaaaccctccactcccttcccctcctaaaccct 26136024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 24560395 - 24560463
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaa 109  Q
    |||| ||||| ||||||||||  |||| |||| || ||||||||||||||  ||| |||||||||||||    
T  24560395 aatttaaaaatgaaaagtaaactctcccatccgttcccctcctaaaccctccatccaaacacaccctaa 24560463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 39363 - 39434
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    |||| |||| |||||||||||||||| |||||  |||||| |||| ||||||||| |||| |||||||||||    
T  39363 tccgtaatttaaaaaagaaaagtaaaccctcccctccctttcccttctaaaccctcaatccaaacacaccct 39434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 10818310 - 10818229
Alignment:
Q  26 tgttatattatccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    ||||||||| |||| |||| ||||||||||| ||||   |||  |||||| |||||||||||||| |||| |||||||||||    
T  10818310 tgttatattgtccgtaatttaaaaaagaaaaataaacaatcccctcccttcccctcctaaaccctcaatccaaacacaccct 10818229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 9719102 - 9719034
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacac 104  Q
    |||| |||| ||||| ||||| ||||||||||  |||||| |||||||||||||| |||| ||||||||    
T  9719102 tccgtaatttaaaaatgaaaaataaatcctcccctcccttcccctcctaaaccctcaatccaaacacac 9719034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 4097676 - 4097759
Alignment:
Q  26 tgttatattatccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaa 109  Q
    ||||||||| |||| |||| ||||||||||||| || ||| |  |||||| ||||| |||||||| |||| |||||||| ||||    
T  4097676 tgttatattgtccgtaatttaaaaaagaaaagtgaacccttccctcccttcccctcttaaaccctcaatccaaacacactctaa 4097759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 6034248 - 6034299
Alignment:
Q  39 gcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccct 90  Q
    |||||| ||||||||||||||||||||| | |||||| |||||| |||||||    
T  6034248 gcaatttaaaaaagaaaagtaaatcctcttttccctttccctccgaaaccct 6034299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 14515544 - 14515473
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    |||| |||| |||||||||||  ||| |||||  |||||| |||||||||||||| |||| |||||||||||    
T  14515544 tccgtaatttaaaaaagaaaaacaaaccctcccctcccttcccctcctaaaccctcaatccaaacacaccct 14515473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 4097300 - 4097235
Alignment:
Q  42 attcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccct 107  Q
    |||||||||| |||||||||  ||| | | |||| |||||||||||||| |||| |||||||||||    
T  4097300 attcaaaaaataaaagtaaactctcatcttccttcccctcctaaaccctcaatccaaacacaccct 4097235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 15323262 - 15323222
Alignment:
Q  70 tcccttgccctcctaaaccctaaatctaaacacaccctaaa 110  Q
    |||||| |||||||||||||| |||| ||||||||||||||    
T  15323262 tcccttcccctcctaaaccctcaatccaaacacaccctaaa 15323222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 15353401 - 15353361
Alignment:
Q  70 tcccttgccctcctaaaccctaaatctaaacacaccctaaa 110  Q
    |||||| |||||||||||||| |||| ||||||||||||||    
T  15353401 tcccttcccctcctaaaccctcaatccaaacacaccctaaa 15353361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 6650 - 6580
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaag 111  Q
    |||| |||||||||||||||| |||||  ||||||  ||||||||| | | |||| |||||||||||||||    
T  6650 aatttaaaaaagaaaagtaaaccctcccctcccttctcctcctaaaacttcaatccaaacacaccctaaag 6580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 3213 - 3141
Alignment:
Q  41 aattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacaccctaaaggt 113  Q
    |||| ||||||||||||||||  ||||  |||||| ||||||||||| || |||| ||||||||  |||||||    
T  3213 aatttaaaaaagaaaagtaaactctcccctcccttcccctcctaaactctcaatccaaacacactttaaaggt 3141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 1243 - 1175
Alignment:
Q  36 tccgcaattcaaaaaagaaaagtaaatcctcctatcccttgccctcctaaaccctaaatctaaacacac 104  Q
    |||| |||| ||||||||||||||||  ||||  || ||| |||||||||||||| |||| ||||||||    
T  1243 tccgtaatttaaaaaagaaaagtaaactctcccctctcttcccctcctaaaccctcaatccaaacacac 1175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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