View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8344_low_4 (Length: 385)
Name: NF8344_low_4
Description: NF8344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8344_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 29 - 373
Target Start/End: Complemental strand, 5317883 - 5317539
Alignment:
| Q |
29 |
cttaccaaaaattacaagaaacggataaccatttaaggggacactatgctcttattttatgaaggtccacgtccaatggtagaaaaagcaaaatgttatt |
128 |
Q |
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| T |
5317883 |
cttaccaaaaattacaagaaacggataaccatttaaggggacactatgctcttattttatgaaggtccacgtccaatggtagaaaaagcaaaatgttatt |
5317784 |
T |
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| Q |
129 |
aaccagatgtacacaaccaaaataaattagatattaaatgtcccagagtctatccctctggctccttttgatcaaattgaggaagaaacgaggaacaatc |
228 |
Q |
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| T |
5317783 |
aaccagatgtacacaaccaaaataaattagatattaaatgtcccagagtctatctctctggctccttttgatcaaattgaggaagaaacgaggaacaatc |
5317684 |
T |
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| Q |
229 |
ttcttaagtctcctaaggagtgaaaccacacatcctttcatagcaacgtataaagggaactgcatcattgcaaatatgctgacagggaagaatgctgcag |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5317683 |
ttcttaagtctcctaaggagtgaaaccacacatcctttcatagcaacgtataaagggaactgcatcattgcaaatatgctgacagggaagaatgctgcag |
5317584 |
T |
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| Q |
329 |
tataagtcaagcttgaagtccatttgttcttatctaacttgatgt |
373 |
Q |
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| T |
5317583 |
tataagtcaagcttgaagtccatttgttcttatctaacttgatgt |
5317539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 190 - 373
Target Start/End: Original strand, 5327898 - 5328072
Alignment:
| Q |
190 |
ctccttttgatcaaattgaggaagaaacgaggaacaatcttcttaagtctcctaaggagtgaaaccacacatcctttcatagcaacgtataaagggaact |
289 |
Q |
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|||||||||||||| ||||| || ||||||||||||||||||||| ||||||||||||| | | |||||||||||| ||||| ||||||| ||||| |
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| T |
5327898 |
ctccttttgatcaacttgagtaa---acgaggaacaatcttcttaaggctcctaaggagtgccataagacatcctttcatggcaacatataaagtgaact |
5327994 |
T |
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| Q |
290 |
gcatcattgcaaatatgctgacagggaagaatgctgcagtataagtcaagcttgaagtccatttgttcttatctaacttgatgt |
373 |
Q |
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| T |
5327995 |
gcatcattgcaaaaatactgacggggaaaaatgctgcactataag------ttgaactccatttgctcttatctaacttgatgt |
5328072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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