View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8345_high_1 (Length: 679)
Name: NF8345_high_1
Description: NF8345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8345_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 589; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 12 - 661
Target Start/End: Original strand, 21179035 - 21179684
Alignment:
| Q |
12 |
atggacatcatctaatctcatcacatatctacattctaatccaaacaatgtagtacaatactattacattcatacaacttgattctatctcaataccact |
111 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21179035 |
atggatatcatctaatctcatcacatatctacattctaatccaaacaatgtagtacaatactattacattcatacaacttgattctatctcaataccact |
21179134 |
T |
|
| Q |
112 |
aatcctttcaattagcgattggaataaactcattctttattaactcaatttgacgactaaaacacccaagaacacttggatgggatgataagatatttct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
21179135 |
aatcctttcaattagcgattggaataaactcattctttcttaactcaatttgacgactaaaacactcaagagcacttggatgggatgataagatatttct |
21179234 |
T |
|
| Q |
212 |
tctaacttaaccagaggtcatgggttctaatccatccatttaaatgtagcagttgccttaaatctcttgaaggagagctttgtcattcactacctgactt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21179235 |
tctaacttaaccagaggtcatgggttctaatccatccctttaaatgtagcagttgccttaaatctcttgaaggagagctttgtcatccactacctgactt |
21179334 |
T |
|
| Q |
312 |
gagtgattagtctatgcagttgtgtggagatcatatccgattcacacnnnnnnntcgatgactaaaacacaacattggaagataataaaagaaagaaaaa |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21179335 |
gagtgattagtctatgcagttgtgtggagatcatatccgattcacacaaaaaaatcgatgactaaaacacaacattggaagataaaaaaagaaagaaaaa |
21179434 |
T |
|
| Q |
412 |
tatagtagcatggacataacaagtttttcaaattactcaaacaagtaagttattttaattttcaaaactagtgaagtcactctaaactcatcttgcttca |
511 |
Q |
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| T |
21179435 |
tatagtagcatggacataacaagtttttcaaattactcaaacaagtaagttattttaattctcaaaactagtgaagtcactctaaactcatcttgcttca |
21179534 |
T |
|
| Q |
512 |
actagtgaatttgtgacaacattcacagaaacgttttcttctatgcttctagaaagtcttgaattttcaatacctctcacattttgaaatgccggtggct |
611 |
Q |
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| T |
21179535 |
actagtgaatttgtgacaacattcacagaaacgttttcttctatgcttctagagagtcttgaattttcaatacctctcacattttgaaatgccggtggct |
21179634 |
T |
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| Q |
612 |
ttggactaggaagggatgtagtgtcattcccaatcattgttacaacatca |
661 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21179635 |
ttggactaagaagggatgtagtgtcattcccaatcattgttacaacatca |
21179684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 477 - 661
Target Start/End: Complemental strand, 23190528 - 23190343
Alignment:
| Q |
477 |
aactagtgaagtcactctaaa-ctcatcttgcttcaactagtgaatttgtgacaacattcacagaaacgttttcttctatgcttctagaaagtcttgaat |
575 |
Q |
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|||||| |||||||||||||| ||||||||||||||| ||||||| ||||| |||||| ||||| |||| ||||||||||| | || |||||||||| |
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| T |
23190528 |
aactagcgaagtcactctaaaactcatcttgcttcaatgagtgaatctgtgatgccattcagagaaatgtttccttctatgctttttgagagtcttgaat |
23190429 |
T |
|
| Q |
576 |
tttcaatacctctcacattttgaaatgccggtggctttggactaggaagggatgtagtgtcattcccaatcattgttacaacatca |
661 |
Q |
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| T |
23190428 |
attcaatacctctcacgttttgaaatgctggtggctttggaatcggaagggatgcagtgtcattaccaatcattgatacaacatca |
23190343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 487 - 661
Target Start/End: Complemental strand, 23183142 - 23182967
Alignment:
| Q |
487 |
gtcactctaaa-ctcatcttgcttcaactagtgaatttgtgacaacattcacagaaacgttttcttctatgcttctagaaagtcttgaattttcaatacc |
585 |
Q |
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||||||||||| ||||||||||||||| | ||||| ||||| |||||||||||| |||| ||||||||||| | || ||||||||| ||| ||| || |
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| T |
23183142 |
gtcactctaaaactcatcttgcttcaatgactgaatctgtgatgccattcacagaaatgtttccttctatgctttttgagagtcttgaacttttaatgcc |
23183043 |
T |
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| Q |
586 |
tctcacattttgaaatgccggtggctttggactaggaagggatgtagtgtcattcccaatcattgttacaacatca |
661 |
Q |
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|||||||||||||||||| |||||||||||| | ||||| |||| ||||||||| |||| ||||| |||||||||| |
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| T |
23183042 |
tctcacattttgaaatgctggtggctttggaatcggaagcgatgcagtgtcattaccaaacattgatacaacatca |
23182967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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