View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8345_high_10 (Length: 277)
Name: NF8345_high_10
Description: NF8345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8345_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 39556897 - 39556649
Alignment:
| Q |
19 |
gagtcaatatcatcttagtaggcaaagcatagtacataatgagtgataattaaagagattaaattaatcaattaccattacttgatatggaaattcaaga |
118 |
Q |
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| T |
39556897 |
gagtcaatatcatcttagtaagcaaagcatagtacataatgagtgataattaaagagattaaattaatcaattaccattacttgatatggaaattcaaga |
39556798 |
T |
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| Q |
119 |
aaagtgcatggttgagcttgattcatcatttcccttatttgtgctcttctttttcttcttgtaagggatacccctagccttagcttgacactccctaacc |
218 |
Q |
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| T |
39556797 |
aaagtgcatggttgagcttgattcatcatttcccttatttgtgctcttctttttcttcttgtaagggatacccctagccttagcttgacactccctaacc |
39556698 |
T |
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| Q |
219 |
tctctaagataaacgcgaatagcaccgctcgcaaaaggattagtctctg |
267 |
Q |
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| T |
39556697 |
tctctaagataaacgcgaatagcaccgctcgcgaaaggattagtctctg |
39556649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 32002004 - 32002047
Alignment:
| Q |
163 |
tcttctttttcttcttgtaagggatacccctagccttagcttga |
206 |
Q |
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| T |
32002004 |
tcttctttttcttcttgtaaggaattcctctagccttagcttga |
32002047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 4863408 - 4863330
Alignment:
| Q |
163 |
tcttctttttcttcttgtaagggatacccctagccttagcttgacactccctaacctctctaagataaacgcgaatagc |
241 |
Q |
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| T |
4863408 |
tcttctttttctttgtgtaagggatccctctagcctttgattgacactccttaacttcacgaaggtaaacacgaatagc |
4863330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 262
Target Start/End: Complemental strand, 30942248 - 30942143
Alignment:
| Q |
157 |
ttgtgctcttctttttcttcttgtaagggatacccctagccttagcttgacactccctaacctctctaagataaacgcgaatagcaccgctcgcaaaagg |
256 |
Q |
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||||||| |||||||||||||| ||||| ||||| ||||||||||||||| |||| |||| ||| ||||| || || ||||| | ||| || |||||||| |
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| T |
30942248 |
ttgtgcttttctttttcttcttataaggtatacctctagccttagcttgagactctctaatctccctaaggtagacacgaatggaaccactagcaaaagg |
30942149 |
T |
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| Q |
257 |
attagt |
262 |
Q |
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|||||| |
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| T |
30942148 |
attagt |
30942143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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