View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8345_high_2 (Length: 625)
Name: NF8345_high_2
Description: NF8345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8345_high_2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 548; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 19 - 625
Target Start/End: Original strand, 25896516 - 25897122
Alignment:
| Q |
19 |
actactttctgggcacagaggtgaaacttcaacctgatggtactcttattctgtctcaaaccaaatat-tttgtgtccttctccttcgtaccaacatgca |
117 |
Q |
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| T |
25896516 |
actactttctgggcatagaggtgaaacctcaacctgatggtactcttattctgtctcaaaccaaatatatttgtgaccttctccttcgtaccaacatgca |
25896615 |
T |
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| Q |
118 |
agaagccagtggtgttactacccccatggtgtttagtgccaaacttagcaaaactggttctgcttctttttcagattcttccttatatcgttatgtggtt |
217 |
Q |
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| T |
25896616 |
agaagccagtggtgttactacccccatggtctttagtgccaaacttagcaaaaccggttctgcttctttttcagatgcttccttatatcgttatgtggtt |
25896715 |
T |
|
| Q |
218 |
ggtgccttgcaatatgcaattattactagacctgagcttagttactcattcaacaaagtgtttcagatcatggctcaccctttggaagctcactggcagg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25896716 |
ggtgccttgcaatatgcaattattactagacctgagcttagttactcattcaacaaagtgtgtcagatcatggctcaccctttggaagctcactggcagg |
25896815 |
T |
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| Q |
318 |
cagttaaacgtattttacactatctagctgcttctgctcagcaacccttttctctcaatggatattgtgacgctgactaggttgctgacccagatgaccg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25896816 |
cagttaaacgtattttacactatctagctgcttctgctcagcaacccttttctctcaatggatattgtgacgctgactaggttgctgacccagatgaccg |
25896915 |
T |
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| Q |
418 |
tcgttccacctctggagctgctttgttttttggtccaaatcttatatcctggtggtccagaaaacaatctgttgtggctcgttctagtgcaaaagtataa |
517 |
Q |
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| T |
25896916 |
tcgttcctcctctggagctgctttgttttttggttcaaatcttatatcctggtggtccagaaaacaatctgttgtggctcgttctagtgcaaaagtatag |
25897015 |
T |
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| Q |
518 |
taccgtagccttgctctaatcactgcagaaatcctttaggttaagactcttctacaagagcttcaagttcctattgcttccccccttatactgtgataat |
617 |
Q |
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| T |
25897016 |
taccgtagccttgctctaatcactgcagaaatccttta-gttaagactctcctacaagagcttcaagttcctattgcttccccccttatactgtgataat |
25897114 |
T |
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| Q |
618 |
caaagtac |
625 |
Q |
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|||||||| |
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| T |
25897115 |
caaagtac |
25897122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 484
Target Start/End: Complemental strand, 6869604 - 6869548
Alignment:
| Q |
428 |
tctggagctgctttgttttttggtccaaatcttatatcctggtggtccagaaaacaa |
484 |
Q |
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| T |
6869604 |
tctggtgctgctattttctttggtccaaatcttatctccttgtggtctagaaaacaa |
6869548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 546
Target Start/End: Original strand, 26531023 - 26531162
Alignment:
| Q |
407 |
ccagatgaccgtcgttccacctctggagctgctttgttttttggtccaaatcttatatcctggtggtccagaaaacaatctgttgtggctcgttctagtg |
506 |
Q |
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|||||||| |||||||| |||||||| | ||| | ||||| || || |||||| | || |||||||||| ||| | ||||||| ||||| ||||||| |
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| T |
26531023 |
ccagatgatcgtcgttctacctctggtgatgcagtatttttaggccctaatcttctctcttggtggtccaagaaatagactgttgttgctcgctctagtg |
26531122 |
T |
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| Q |
507 |
caaaagtataataccgtagccttgctctaatcactgcaga |
546 |
Q |
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| T |
26531123 |
cagaagcagaataccgcagtctagctctcatcactgcaga |
26531162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 484
Target Start/End: Original strand, 39582558 - 39582614
Alignment:
| Q |
428 |
tctggagctgctttgttttttggtccaaatcttatatcctggtggtccagaaaacaa |
484 |
Q |
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| T |
39582558 |
tctggtgctgctattttctttggtccaaatcttatctccttgtggtctagaaaacaa |
39582614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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