View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8345_high_4 (Length: 560)
Name: NF8345_high_4
Description: NF8345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8345_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 207 - 542
Target Start/End: Original strand, 12552303 - 12552638
Alignment:
| Q |
207 |
ttcgagagctataaataatgtgannnnnnnnatttgtcttgtaggtggtcgaagattgcagctcatctaccaggacgaacagataacgagataaaaaatt |
306 |
Q |
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| T |
12552303 |
ttcgagagctataaataatgtgattttttttatttgtcttgtagatggtcgaagattgcagctcatctaccaggacgaacagataacgagataaaaaatt |
12552402 |
T |
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| Q |
307 |
attggaacacaaacataaggaaaaagcttctcaagatgggaattgatcctgaaactcacaagccaagaactgattacaatcacctcatgagtctttcaaa |
406 |
Q |
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| T |
12552403 |
attggaacacaaacataaggaaaaagcttctcaagatgggaattgatcctgaaactcacaagccaagaactgattacaatcacctcatgagtctttcaaa |
12552502 |
T |
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| Q |
407 |
cttacttggcatgtcaaatataggcaatacttttagcaacaaccctcttggtttacaaccagatattacccacctagccaaaatgcaattgttgcaaaat |
506 |
Q |
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| T |
12552503 |
cttacttggcatgtcaaatataggcaatacttttagcaacaaccctcttggtttacaaccagatattacccacctagccaaaatgcaattgttgcaaaat |
12552602 |
T |
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| Q |
507 |
atgttgcaaattatgaacacaaataattcatttggt |
542 |
Q |
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| T |
12552603 |
atgttgcaaattatgaacacaaataattcatttggt |
12552638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 12552042 - 12552231
Alignment:
| Q |
19 |
tcacagatgaagaagaaagagttatcatcaaccttcattcagttcttggaaacaagtatatttcttaacttgttttttcttatgtagaaaatgatattga |
118 |
Q |
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| T |
12552042 |
tcactgatgaagaagaaagagttatcatcaaccttcattcagttcttggaaacaagtatatttcttatcttgttttttcttatgtagaaaatgatattga |
12552141 |
T |
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| Q |
119 |
aatcactctaaagatagcgacggaatttcacagacggaaaaaataatttcgtctctaattccatcactaagtgtt--agacgtcaatttt |
206 |
Q |
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| T |
12552142 |
aatcactctaaagatagcgacggaatttcagagacggaaaaaataatttcgtctctaattccatcactaagtgttagagacgtcaatttt |
12552231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 42422690 - 42422618
Alignment:
| Q |
283 |
gaacagataacgagataaaaaattattggaacacaaacataaggaaaaagcttctcaagatgggaattgatcc |
355 |
Q |
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| T |
42422690 |
gaacagacaatgagattaaaaatcattggaacacacacatcaagaaaaagctcattaagatgggaattgatcc |
42422618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 50200060 - 50200020
Alignment:
| Q |
274 |
taccaggacgaacagataacgagataaaaaattattggaac |
314 |
Q |
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| T |
50200060 |
taccaggacgtacagataatgagataaaaaattattggaac |
50200020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 316
Target Start/End: Original strand, 27808566 - 27808608
Alignment:
| Q |
274 |
taccaggacgaacagataacgagataaaaaattattggaacac |
316 |
Q |
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| T |
27808566 |
taccaggaagaacagataatgagataaagaattattggaacac |
27808608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 13344872 - 13344938
Alignment:
| Q |
248 |
taggtggtcgaagattgcagctcatctaccaggacgaacagataacgagataaaaaattattggaac |
314 |
Q |
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| T |
13344872 |
taggtggtcggtgatagcatcacatttaccaggacgaacagataatgagataaagaactattggaac |
13344938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 45675867 - 45675811
Alignment:
| Q |
249 |
aggtggtcgaagattgcagctcatctaccaggacgaacagataacgagataaaaaat |
305 |
Q |
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| T |
45675867 |
aggtggtcgcagattgcagctcagttacctggaagaacagacaatgagataaaaaat |
45675811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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