View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8345_high_5 (Length: 480)
Name: NF8345_high_5
Description: NF8345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8345_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 58 - 463
Target Start/End: Original strand, 7809188 - 7809591
Alignment:
| Q |
58 |
tgttaataacaattgtggttgggactagtgggttatactcaaataatgtgaggaatcaattttcgaattttggctgaagatgtatttgtatttagtgtct |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7809188 |
tgttaataacaattgtggttgggactagtgggttatactcaaataatgtgaggaatcaatattcgaattttggctgaagatgtatttatatttagtgtct |
7809287 |
T |
|
| Q |
158 |
gatacacttcgaatataattatttaaagatttgatgcaaatgttaaattgaacttgagagcgaccttaaaatggtcatagtatatgacaagctttgaaat |
257 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||| ||||||||| |
|
|
| T |
7809288 |
gacacgcttcgaatataattatttaaagatttgatgcaaatgttaagttgaacttgagagcgaccttaaaatggtcatagtgtataacaaactttgaaat |
7809387 |
T |
|
| Q |
258 |
ggatttacactttgtcttggcatattgagagtgacctttggattgggtggcaattgccaattgccatattattgatacggacgagggattgaaaattcat |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7809388 |
ggatttacactttgtcttggcatattgagagtgacctttggattgggtggcaattgccaattgccatattattgatacggacgagggattgaaaattcat |
7809487 |
T |
|
| Q |
358 |
gataagtttgtgcaattttctatttgtccatgtaaaacaatttgaccatttattagccattttacatcattttcaagtctattaaataaatttatctcta |
457 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7809488 |
gataagtttgtgcaa--ttctatttgtccatgtaaaacaatttgaccatttattagccattttacatcattttcaagtctattaaattaatttatctcta |
7809585 |
T |
|
| Q |
458 |
ccttat |
463 |
Q |
| |
|
|||||| |
|
|
| T |
7809586 |
ccttat |
7809591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 42
Target Start/End: Original strand, 7809154 - 7809185
Alignment:
| Q |
11 |
tgagatgaaaatggaatgattcttagtttaag |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
7809154 |
tgagatgaaaatggaatgattcttagtttaag |
7809185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University