View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8345_high_7 (Length: 337)
Name: NF8345_high_7
Description: NF8345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8345_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 41966534 - 41966848
Alignment:
| Q |
1 |
ctgcctacaatgattattaaaaataatgttacttatctaagatgaggacacgagtgttatagtgaaactacgactttcaactctttcaaaagacaaaccc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41966534 |
ctgcctacaatgattattaaaaataatgttatttatctaagatgaggacacgagtgttatagtgaaactacgactttcaactctttcaaaagacaaaccc |
41966633 |
T |
|
| Q |
101 |
aaccattccaaatggaaaaatccaatccaagactatagtattacttttctctgtctacccacttgaggttattggaactctcctcctcgttatgtgatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41966634 |
aaccattccaaatggaaaaatccaatccaagactatagtattacttttctctgtctacccacttgaggttattggaactctcctcctcgttatgtgatat |
41966733 |
T |
|
| Q |
201 |
taatgactacccaaagcccagcattcccacactcttcaaatattttcttaagactaagtcttaatgcgtaaattgtttattacacaaccgacccatctca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41966734 |
taatgactacccaaagcccagcattcccacactcttcaaatattttcttaagactaagtcttaatgcgtaaattgtttattacactaccgacccatctca |
41966833 |
T |
|
| Q |
301 |
aagatcataatacta |
315 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
41966834 |
aagatcataatacta |
41966848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University