View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8345_high_8 (Length: 335)

Name: NF8345_high_8
Description: NF8345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8345_high_8
NF8345_high_8
[»] chr5 (28 HSPs)
chr5 (1-318)||(40882010-40882328)
chr5 (262-318)||(33377839-33377895)
chr5 (262-318)||(8489140-8489196)
chr5 (162-261)||(40802356-40802455)
chr5 (263-318)||(5146694-5146749)
chr5 (262-314)||(8323903-8323955)
chr5 (262-318)||(35454641-35454696)
chr5 (262-317)||(35454468-35454522)
chr5 (262-316)||(19897242-19897295)
chr5 (276-317)||(14388512-14388553)
chr5 (262-318)||(228734-228790)
chr5 (262-306)||(6518220-6518264)
chr5 (262-318)||(13823339-13823395)
chr5 (262-318)||(19898945-19899001)
chr5 (262-314)||(26534693-26534745)
chr5 (262-318)||(27319658-27319714)
chr5 (262-314)||(791609-791661)
chr5 (262-314)||(26534523-26534575)
chr5 (262-318)||(42630728-42630784)
chr5 (263-314)||(130443-130494)
chr5 (262-313)||(5146521-5146571)
chr5 (262-313)||(14069878-14069928)
chr5 (280-318)||(40881825-40881863)
chr5 (262-314)||(130271-130323)
chr5 (262-314)||(8323724-8323776)
chr5 (276-306)||(228987-229017)
chr5 (263-317)||(6518395-6518448)
chr5 (264-314)||(42630902-42630952)
[»] chr6 (14 HSPs)
chr6 (1-261)||(8909723-8909982)
chr6 (270-318)||(7789861-7789909)
chr6 (262-318)||(21389038-21389094)
chr6 (262-314)||(33022363-33022415)
chr6 (262-317)||(21389214-21389268)
chr6 (192-261)||(18691939-18692009)
chr6 (262-318)||(7789684-7789739)
chr6 (262-314)||(33022181-33022233)
chr6 (113-261)||(8848285-8848443)
chr6 (108-163)||(7457123-7457178)
chr6 (88-162)||(19214929-19215003)
chr6 (91-154)||(13548491-13548554)
chr6 (88-179)||(31876899-31876990)
chr6 (192-240)||(18700614-18700663)
[»] chr8 (18 HSPs)
chr8 (262-318)||(2814435-2814491)
chr8 (263-318)||(397196-397251)
chr8 (262-314)||(41539787-41539839)
chr8 (262-317)||(14193517-14193571)
chr8 (262-318)||(14193340-14193396)
chr8 (262-314)||(41539966-41540017)
chr8 (192-261)||(23126717-23126787)
chr8 (262-314)||(2814260-2814311)
chr8 (262-314)||(37994903-37994955)
chr8 (197-263)||(21349438-21349504)
chr8 (264-314)||(44036833-44036883)
chr8 (115-156)||(27817124-27817165)
chr8 (262-314)||(37994725-37994777)
chr8 (262-313)||(397024-397074)
chr8 (198-261)||(27815513-27815576)
chr8 (115-157)||(27815441-27815483)
chr8 (191-261)||(29634494-29634564)
chr8 (262-311)||(25101747-25101796)
[»] chr1 (25 HSPs)
chr1 (263-317)||(50905104-50905158)
chr1 (262-317)||(23346436-23346491)
chr1 (271-318)||(50892989-50893036)
chr1 (272-318)||(7062034-7062080)
chr1 (263-317)||(41833892-41833946)
chr1 (262-318)||(28217710-28217766)
chr1 (262-318)||(48871428-48871484)
chr1 (262-317)||(48752586-48752640)
chr1 (276-317)||(28217560-28217601)
chr1 (262-314)||(19059391-19059443)
chr1 (262-317)||(10227904-10227959)
chr1 (271-318)||(39669249-39669296)
chr1 (263-317)||(42180764-42180817)
chr1 (262-314)||(10227729-10227781)
chr1 (262-317)||(7062189-7062243)
chr1 (262-317)||(23346613-23346667)
chr1 (262-317)||(48871264-48871318)
chr1 (262-317)||(50893155-50893209)
chr1 (275-318)||(50905023-50905066)
chr1 (262-316)||(42180588-42180641)
chr1 (276-317)||(4156922-4156963)
chr1 (265-314)||(26552187-26552236)
chr1 (279-316)||(41834069-41834106)
chr1 (262-314)||(26552007-26552059)
chr1 (276-317)||(39669087-39669128)
[»] chr7 (11 HSPs)
chr7 (262-318)||(7298652-7298708)
chr7 (262-318)||(40521207-40521263)
chr7 (262-317)||(16979610-16979664)
chr7 (271-318)||(46568149-46568196)
chr7 (88-238)||(6768504-6768653)
chr7 (276-317)||(46567987-46568028)
chr7 (262-317)||(28948998-28949052)
chr7 (262-316)||(40521033-40521086)
chr7 (262-313)||(7298833-7298883)
chr7 (108-165)||(26646020-26646077)
chr7 (262-314)||(19805609-19805661)
[»] chr3 (14 HSPs)
chr3 (262-318)||(19580501-19580557)
chr3 (262-318)||(36635429-36635485)
chr3 (262-314)||(36274136-36274188)
chr3 (262-314)||(27073103-27073155)
chr3 (262-314)||(33214460-33214512)
chr3 (262-314)||(36274320-36274372)
chr3 (88-261)||(6079717-6079895)
chr3 (262-314)||(10598825-10598877)
chr3 (263-307)||(10599000-10599044)
chr3 (262-314)||(33214634-33214686)
chr3 (262-318)||(33219089-33219145)
chr3 (262-313)||(36635255-36635305)
chr3 (262-308)||(11651017-11651063)
chr3 (262-306)||(27072930-27072974)
[»] chr2 (21 HSPs)
chr2 (262-318)||(15332853-15332909)
chr2 (262-314)||(36059282-36059334)
chr2 (262-314)||(42028595-42028647)
chr2 (262-318)||(31470604-31470659)
chr2 (262-314)||(38085984-38086035)
chr2 (270-318)||(38086158-38086206)
chr2 (262-317)||(3671838-3671892)
chr2 (262-317)||(31860096-31860151)
chr2 (260-314)||(16115061-16115115)
chr2 (262-314)||(2059679-2059731)
chr2 (262-318)||(3672014-3672070)
chr2 (262-314)||(13280030-13280082)
chr2 (262-318)||(16115235-16115291)
chr2 (262-314)||(42028773-42028825)
chr2 (262-311)||(7317833-7317882)
chr2 (262-311)||(31860283-31860332)
chr2 (262-318)||(2059507-2059563)
chr2 (262-314)||(7317652-7317704)
chr2 (262-317)||(31470770-31470824)
chr2 (88-158)||(24864031-24864101)
chr2 (262-306)||(13279857-13279901)
[»] scaffold0140 (1 HSPs)
scaffold0140 (262-313)||(15864-15915)
[»] chr4 (15 HSPs)
chr4 (262-314)||(11147031-11147083)
chr4 (262-318)||(18936868-18936924)
chr4 (262-318)||(37177817-37177873)
chr4 (270-316)||(5121000-5121046)
chr4 (262-314)||(3102735-3102787)
chr4 (262-318)||(18381500-18381556)
chr4 (262-314)||(40533980-40534032)
chr4 (262-314)||(40534158-40534210)
chr4 (276-317)||(18936706-18936747)
chr4 (262-314)||(3102557-3102609)
chr4 (262-314)||(13690232-13690284)
chr4 (108-165)||(51030293-51030350)
chr4 (262-314)||(9231597-9231649)
chr4 (264-307)||(9231782-9231825)
chr4 (263-317)||(11147217-11147270)
[»] scaffold0214 (2 HSPs)
scaffold0214 (262-314)||(11822-11874)
scaffold0214 (262-318)||(11643-11699)
[»] scaffold0135 (2 HSPs)
scaffold0135 (262-314)||(37463-37515)
scaffold0135 (264-307)||(37648-37691)
[»] scaffold0164 (1 HSPs)
scaffold0164 (88-162)||(5037-5111)
[»] scaffold0017 (1 HSPs)
scaffold0017 (119-160)||(38722-38763)


Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 40882328 - 40882010
Alignment:
Q  1 taaagtgctaaagatattgttttttgtatgacaatgtgttaaagagattatgttttatttatatttctattttatggtgagtatgttttatcttatgtct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40882328 taaagtgctaaagatattgttttttgtatgacaatgtgttaaagagattatgttttatttatatttctattttatggtgagtatgttttatcttatgtct 40882229  T
Q  101 aaaattgtttgtattaaaaaataacaat--tatgatgtgttctaatcctctcttattctcttactatatctttttattgatggaataactggctactcga 198  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||| ||    
T  40882228 aaaattgtttgtattaaaaaataacaattatatgatgtgttctaatcctctcttattcttttattatatctttttattgatggaataact-gctacttga 40882130  T
Q  199 aagtaacattttcttttttaacttatcacttttatttagatatatgcgtttgcgcagtagaaagaacgaatctaacatatcattcttacaaacaacaaat 298  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40882129 aagtaacattttcttttttaacctatcacttttatttagatatatgcgtttgcgcagtagaaagaacgaatctaacatatcattcttacaaacaacaaat 40882030  T
Q  299 taaaacatgacacgtcattg 318  Q
    ||||| ||||||||| ||||    
T  40882029 taaaatatgacacgttattg 40882010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 33377895 - 33377839
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33377895 gaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 33377839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 8489140 - 8489196
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8489140 gaacaaatctaacatatcattcttacaaacaacaaattaaaatatgacacgtcattg 8489196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 162 - 261
Target Start/End: Original strand, 40802356 - 40802455
Alignment:
Q  162 ctatatctttttattgatggaataactggctactcgaaagtaacattttcttttttaacttatcactttt-atttagatatatgcgtttgcgcagtagaa 260  Q
    |||||||| |||||| ||| |||||||   ||||| ||||||||||||||||||| ||| |||||||||| ||||||||||||| |||||||||||||||    
T  40802356 ctatatctctttatttatgaaataactat-tactcaaaagtaacattttctttttcaacctatcacttttaatttagatatatgtgtttgcgcagtagaa 40802454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 5146749 - 5146694
Alignment:
Q  263 aacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5146749 aacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtcattg 5146694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 8323955 - 8323903
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  8323955 gaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 8323903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 35454696 - 35454641
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35454696 gaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcattg 35454641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 35454468 - 35454522
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35454468 gaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatt 35454522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 19897242 - 19897295
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcat 316  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  19897242 gaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcat 19897295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 14388553 - 14388512
Alignment:
Q  276 tatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14388553 tatcattcttacaaacaacaaattaaaacatgacacgtcatt 14388512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 228734 - 228790
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||| ||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  228734 gaacgaacctaacatatcattcttataaacaataaattaaaacatgacacgttattg 228790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 6518220 - 6518264
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacat 306  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  6518220 gaacgaacctaacatatcattcttacaaacaacaaattaaaacat 6518264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 13823395 - 13823339
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    |||||||  |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  13823395 gaacgaacttaacatatcatttttacaaataacaaattaaaacatgacacgtcattg 13823339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 19899001 - 19898945
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||| ||||||||||||| ||| ||||||||||||||||||||||| |||||||    
T  19899001 gaacgaacctaacatatcatttttataaacaacaaattaaaacatgacatgtcattg 19898945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 26534745 - 26534693
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||    
T  26534745 gaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtc 26534693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 27319714 - 27319658
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||| || ||||||    
T  27319714 gaaccaatctaacatatcattcttacaaacaacaaattaaaatatgaaacatcattg 27319658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 791609 - 791661
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| || ||| ||||||||||||||||||||||||||||||||    
T  791609 gaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtc 791661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 26534523 - 26534575
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| |||||  ||||||||||||||||||||||||||||||||    
T  26534523 gaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtc 26534575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 42630728 - 42630784
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||| ||||| |||||| ||||||||||||||| ||||||||||||| ||||||    
T  42630728 gaacgaacctaacctatcatccttacaaacaacaaactaaaacatgacacttcattg 42630784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 314
Target Start/End: Complemental strand, 130494 - 130443
Alignment:
Q  263 aacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    |||||| ||||| |||||| |||||||||||||||||||||||| |||||||    
T  130494 aacgaacctaacctatcatccttacaaacaacaaattaaaacataacacgtc 130443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 313
Target Start/End: Original strand, 5146521 - 5146571
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgt 313  Q
    ||||||| ||||| |||||||||||||||||| |||||||||||||||||||    
T  5146521 gaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgt 5146571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 313
Target Start/End: Original strand, 14069878 - 14069928
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgt 313  Q
    ||||||| ||||| ||||||||||| ||||||||||||||||||||||||||    
T  14069878 gaacgaacctaac-tatcattcttataaacaacaaattaaaacatgacacgt 14069928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 318
Target Start/End: Original strand, 40881825 - 40881863
Alignment:
Q  280 attcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  40881825 attcttacaaacaataaattaaaacatgacacgtcattg 40881863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 130271 - 130323
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| | |||  ||||||||||||||||||||||||||||||||    
T  130271 gaacgaacctaacctgtcaaccttacaaacaacaaattaaaacatgacacgtc 130323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 8323724 - 8323776
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| ||||||  |||||||||| ||||||||||||||||||||    
T  8323724 gaacgaacctaacctatcatctttacaaacaataaattaaaacatgacacgtc 8323776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 306
Target Start/End: Complemental strand, 229017 - 228987
Alignment:
Q  276 tatcattcttacaaacaacaaattaaaacat 306  Q
    |||||||||||||||||||||||||||||||    
T  229017 tatcattcttacaaacaacaaattaaaacat 228987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 317
Target Start/End: Complemental strand, 6518448 - 6518395
Alignment:
Q  263 aacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    |||||| ||||| |||||||||||||||||||||||||||| |||| || |||||    
T  6518448 aacgaacctaac-tatcattcttacaaacaacaaattaaaatatgatacatcatt 6518395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 42630952 - 42630902
Alignment:
Q  264 acgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||| ||||| |||||| ||||||||||| ||||||||| ||||||||||    
T  42630952 acgaacctaacctatcatccttacaaacaataaattaaaatatgacacgtc 42630902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 8909723 - 8909982
Alignment:
Q  1 taaagtgctaaagatattgttttttgtatgacaatgtgttaaagagattatgttttatttatatttctattttatggtgagtatgttttatcttatgtct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8909723 taaagtgctaaagatattgttttttgtatgacaatgtgttaaagagattatgttttatttatatttctattttatggtgagtatgttttatcttatgtct 8909822  T
Q  101 aaaattgtttgtattaaaaaataacaattatgatgtgttctaatcctctcttattctcttactatatctttttattgatggaataactggctactcgaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||    
T  8909823 aaaattgtttgtattaaaaaataacaattatgatgtgttctaatcctctcttattctcttactatatccttttattgatggaataact-gctactcaaaa 8909921  T
Q  201 gtaacattttcttttttaacttatcacttttatttagatatatgcgtttgcgcagtagaaa 261  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8909922 gtaacattttcttttttaacctatcacttttatttagatatatgcgtttgcgcagtagaaa 8909982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 7789909 - 7789861
Alignment:
Q  270 ctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7789909 ctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 7789861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 21389038 - 21389094
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21389038 gaacgaacctaacatatcattcttacaaacaacaaattaaaacatgatacgtcattg 21389094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 33022415 - 33022363
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  33022415 gaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 33022363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 21389268 - 21389214
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21389268 gaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatt 21389214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 18692009 - 18691939
Alignment:
Q  192 tactcgaaagtaacattttcttttttaacttatcactttt-atttagatatatgcgtttgcgcagtagaaa 261  Q
    ||||| ||||||||||||||||||| ||| |||||||||| ||||||||| ||| ||||||||||||||||    
T  18692009 tactcaaaagtaacattttctttttcaacctatcacttttaatttagatacatgtgtttgcgcagtagaaa 18691939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 7789684 - 7789739
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  7789684 gaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacatgtcattg 7789739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 33022181 - 33022233
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||    
T  33022181 gaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtc 33022233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 8848443 - 8848285
Alignment:
Q  113 attaaaaaataacaattatgatgtgttct--aatcctctcttattctcttactat--------atctttttattgatggaataactggctactcgaaagt 202  Q
    ||||| |||||| ||||||| ||||||||  ||||||||||||||||||||||||        |||| |||||| ||| |||| ||   ||||| |||||    
T  8848443 attaataaataataattatggtgtgttctctaatcctctcttattctcttactatctatttatatctctttatttatgaaatagctat-tactcaaaagt 8848345  T
Q  203 aacattttcttttttaacttatcactttt-atttagatatatgcgtttgcgcagtagaaa 261  Q
    || ||||||||||| ||| |||||||||| ||||||||| ||| ||||||| ||||||||    
T  8848344 aatattttctttttcaacctatcacttttaatttagatacatgtgtttgcgaagtagaaa 8848285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 7457178 - 7457123
Alignment:
Q  108 tttgtattaaaaaataacaattatgatgtgttctaatcctctcttattctcttact 163  Q
    ||||||||||  ||||||||||| | |||||||||||||||||||||||| |||||    
T  7457178 tttgtattaattaataacaattacggtgtgttctaatcctctcttattcttttact 7457123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 19215003 - 19214929
Alignment:
Q  88 ttatcttatgtctaaaattgtttgtattaaaaaataacaattatgatgtgttctaatcctctcttattctcttac 162  Q
    ||||||||||| || || | |||  ||||| |||||||||||||  ||||||||||||||||||||||| |||||    
T  19215003 ttatcttatgtttacaactatttcaattaataaataacaattatagtgtgttctaatcctctcttattcacttac 19214929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 13548554 - 13548491
Alignment:
Q  91 tcttatgtctaaaattgtttgtattaaaaaataacaattatgatgtgttctaatcctctcttat 154  Q
    |||||||| || || | |||| ||||| |||||||||||||  |||||||||||||||||||||    
T  13548554 tcttatgtttacaactatttgaattaataaataacaattatagtgtgttctaatcctctcttat 13548491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 179
Target Start/End: Original strand, 31876899 - 31876990
Alignment:
Q  88 ttatcttatgtctaaaattgtttgtattaaaaaataacaattatgatgtgttctaatcctctcttattctcttactatatctttttattgat 179  Q
    ||||||||| | ||||||  ||||||||||  ||||||||||| | ||||||  |||| ||||||||||| ||||||| | ||| |||||||    
T  31876899 ttatcttatctttaaaatcatttgtattaattaataacaattacggtgtgtttaaatcatctcttattcttttactatctatttatattgat 31876990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 18700663 - 18700614
Alignment:
Q  192 tactcgaaagtaacattttcttttttaacttatcactttt-atttagata 240  Q
    ||||| ||||||||||||||||||| ||| |||||||||| |||||||||    
T  18700663 tactcaaaagtaacattttctttttcaacctatcacttttaatttagata 18700614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 2814491 - 2814435
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2814491 gaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 2814435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 397251 - 397196
Alignment:
Q  263 aacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  397251 aacgaacctaacatatcattcttataaacaacaaattaaaacatgacacgtcattg 397196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 41539787 - 41539839
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  41539787 gaacgaacctaacatatcattcttacaaacaacaaattaaaatatgacacgtc 41539839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 14193571 - 14193517
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14193571 gaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatt 14193517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 14193340 - 14193396
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||| ||||||||| ||| |||||||||||||||||||||||||||| ||||||    
T  14193340 gaacgaacctaacatattatttttacaaacaacaaattaaaacatgacacatcattg 14193396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 41540017 - 41539966
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  41540017 gaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 41539966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 23126717 - 23126787
Alignment:
Q  192 tactcgaaagtaacattttcttttttaacttatcactttt-atttagatatatgcgtttgcgcagtagaaa 261  Q
    ||||| ||||||||||||||||||| ||| |||||||||| ||||||||| |||  |||||||||||||||    
T  23126717 tactcaaaagtaacattttctttttcaacctatcacttttaatttagatacatgtatttgcgcagtagaaa 23126787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 2814260 - 2814311
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| ||||||||||||||||||||||||||| |||||||||||    
T  2814260 gaacgaacctaac-tatcattcttacaaacaacaaattaaatcatgacacgtc 2814311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 37994955 - 37994903
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| |||||| ||||||||||| ||||||||||||||||||||    
T  37994955 gaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacgtc 37994903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 21349504 - 21349438
Alignment:
Q  197 gaaagtaacattttcttttttaacttatcacttttatttagatatatgcgtttgcgcagtagaaaga 263  Q
    |||||||||||||||||||| ||  ||||||||||||||| |||  ||| || ||||||||||||||    
T  21349504 gaaagtaacattttctttttgaatctatcacttttatttaaatacgtgcattagcgcagtagaaaga 21349438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 44036833 - 44036883
Alignment:
Q  264 acgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||| ||||| |||||| ||||||||||||||||| ||||||||||||||    
T  44036833 acgaacctaacctatcatccttacaaacaacaaattcaaacatgacacgtc 44036883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 27817124 - 27817165
Alignment:
Q  115 taaaaaataacaattatgatgtgttctaatcctctcttattc 156  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  27817124 taaaaaataacaattacggtgtgttctaatcctctcttattc 27817165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 37994725 - 37994777
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| |||||| ||||||||||| |||||||||||||| |||||    
T  37994725 gaacgaacctaacctatcatccttacaaacaataaattaaaacatgatacgtc 37994777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 313
Target Start/End: Original strand, 397024 - 397074
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgt 313  Q
    ||||||| ||||| |||||||||||||||||| |||||||||||| ||||||    
T  397024 gaacgaacctaac-tatcattcttacaaacaataaattaaaacataacacgt 397074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 261
Target Start/End: Original strand, 27815513 - 27815576
Alignment:
Q  198 aaagtaacattttcttttttaacttatcacttttatttagatatatgcgtttgcgcagtagaaa 261  Q
    ||||||||||||||||||||||| |||||||||| | ||  || ||| ||||| ||||||||||    
T  27815513 aaagtaacattttcttttttaacctatcacttttgtctatttacatgtgtttgtgcagtagaaa 27815576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 27815441 - 27815483
Alignment:
Q  115 taaaaaataacaattatgatgtgttctaatcctctcttattct 157  Q
    |||||||||||||||| | | ||||||||||||||||||||||    
T  27815441 taaaaaataacaattacggtttgttctaatcctctcttattct 27815483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 29634494 - 29634564
Alignment:
Q  191 ctactcgaaagtaacattttcttttttaacttatcacttttatttagatatatgcgtttgcgcagtagaaa 261  Q
    |||||| ||||||| ||||||||||  ||| |||||||||| | |||| || || ||||||||||||||||    
T  29634494 ctactctaaagtaaaattttcttttacaacctatcacttttgtatagaaatgtgtgtttgcgcagtagaaa 29634564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 25101747 - 25101796
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacac 311  Q
    ||||||| ||||| |||||||||| ||||||||||| ||||| |||||||    
T  25101747 gaacgaacctaacctatcattcttgcaaacaacaaaataaaatatgacac 25101796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 263 - 317
Target Start/End: Complemental strand, 50905158 - 50905104
Alignment:
Q  263 aacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  50905158 aacgaatctaacatatcattcttacaaacaacaaattaaaacatgatacgtcatt 50905104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 23346436 - 23346491
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  23346436 gaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcatt 23346491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 50892989 - 50893036
Alignment:
Q  271 taacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50892989 taacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 50893036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 7062034 - 7062080
Alignment:
Q  272 aacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  7062034 aacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 7062080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 263 - 317
Target Start/End: Original strand, 41833892 - 41833946
Alignment:
Q  263 aacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  41833892 aacgaatctaatatatcattcttacacacaacaaattaaaacatgacacgtcatt 41833946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 28217766 - 28217710
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  28217766 gaacgaacctaacatatcattcttacaaacaacaaatcaaaacatgacacatcattg 28217710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 48871484 - 48871428
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||    
T  48871484 gaacgaacctaacatatcattcttacaaacaacaaattaaaacattgcacgtcattg 48871428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 48752640 - 48752586
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48752640 gaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatt 48752586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 28217560 - 28217601
Alignment:
Q  276 tatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  28217560 tatcattcttacaaacaacaaattaaaacatgacacgtcatt 28217601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 19059391 - 19059443
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||    
T  19059391 gaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtc 19059443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 10227959 - 10227904
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    ||||||| ||||| |||||| ||||||||||||||||||||||||||||| |||||    
T  10227959 gaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacatcatt 10227904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 39669296 - 39669249
Alignment:
Q  271 taacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||    
T  39669296 taacatatcattcttacaaagaacaaattaaaacatgacacgttattg 39669249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 317
Target Start/End: Complemental strand, 42180817 - 42180764
Alignment:
Q  263 aacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||    
T  42180817 aacgaatctaa-atatcattcttacaaacaacaaactaaaacatgacacatcatt 42180764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 10227729 - 10227781
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| || ||| ||||||||||||||||||||||||||||||||    
T  10227729 gaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtc 10227781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 7062243 - 7062189
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    ||||||| ||||| ||||||| |||||||||||||||||||| |||||||||||||    
T  7062243 gaacgaacctaac-tatcatttttacaaacaacaaattaaaatatgacacgtcatt 7062189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 23346667 - 23346613
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    ||||||| ||||| |||||||||||||||||| |||||||||||||||| ||||||    
T  23346667 gaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacatgtcatt 23346613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 48871264 - 48871318
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    ||||||| ||||| ||||||||||||||| |||||||||||||||||||| |||||    
T  48871264 gaacgaacctaac-tatcattcttacaaataacaaattaaaacatgacacatcatt 48871318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 50893209 - 50893155
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    ||||||| ||||| ||||||| |||||||||||||||||||||||||||| |||||    
T  50893209 gaacgaacctaac-tatcattattacaaacaacaaattaaaacatgacacatcatt 50893155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 318
Target Start/End: Original strand, 50905023 - 50905066
Alignment:
Q  275 atatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    |||||||| ||||||||||||| |||||||||||||||||||||    
T  50905023 atatcatttttacaaacaacaagttaaaacatgacacgtcattg 50905066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 42180588 - 42180641
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcat 316  Q
    ||||||| ||||| || |||| |||||||||||||||||||||||||||||||||    
T  42180588 gaacgaacctaac-tagcattattacaaacaacaaattaaaacatgacacgtcat 42180641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 4156922 - 4156963
Alignment:
Q  276 tatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  4156922 tatcattcttacaaataataaattaaaacatgacacgtcatt 4156963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 26552236 - 26552187
Alignment:
Q  265 cgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    |||| ||||| |||||| ||||||||||||||||||||| ||||||||||    
T  26552236 cgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtc 26552187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 316
Target Start/End: Complemental strand, 41834106 - 41834069
Alignment:
Q  279 cattcttacaaacaacaaattaaaacatgacacgtcat 316  Q
    |||| |||||||||||||||||||||||||||||||||    
T  41834106 cattattacaaacaacaaattaaaacatgacacgtcat 41834069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 26552007 - 26552059
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||||||||| |||||| ||||||||||| ||||||||| ||| ||||||    
T  26552007 gaacgaatctaacctatcatccttacaaacaaaaaattaaaatatggcacgtc 26552059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 39669087 - 39669128
Alignment:
Q  276 tatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    |||||||||||||||||| ||||||||| |||| ||||||||    
T  39669087 tatcattcttacaaacaataaattaaaatatgatacgtcatt 39669128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 7298652 - 7298708
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7298652 gaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattg 7298708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 40521263 - 40521207
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40521263 gaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacatcattg 40521207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 16979664 - 16979610
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  16979664 gaacgaatctaac-tatcattcttacaaataacaaattaaaacatgacacgtcatt 16979610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 46568196 - 46568149
Alignment:
Q  271 taacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46568196 taacatatcattcttacaaacaacaaattaaaacatgacacatcattg 46568149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 6768653 - 6768504
Alignment:
Q  88 ttatcttatgtctaaaattgtttgtattaaaaaataacaattatgatgtgttctaatcctctcttattctcttactatatctttttattgatggaataac 187  Q
    ||||||||||| ||||| | |||||||||| ||||| |||||| | || ||||||| ||| ||||||||||||||||| | ||| |||   |  | | ||    
T  6768653 ttatcttatgtttaaaactatttgtattaataaatagcaattagggtgcgttctaaacctttcttattctcttactatctatttgtatatttttattcac 6768554  T
Q  188 tggctactcgaaagtaacattttcttttttaacttatcacttttatttaga 238  Q
    | || | | |||||||||||||||||||| ||| |||||||||||||||||    
T  6768553 tagc-atttgaaagtaacattttctttttgaacctatcacttttatttaga 6768504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 46567987 - 46568028
Alignment:
Q  276 tatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  46567987 tatcattcttacaaacaacaaattaaaacatgacacgtcatt 46568028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 28949052 - 28948998
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    ||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||    
T  28949052 gaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgtcatt 28948998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 40521033 - 40521086
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcat 316  Q
    ||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||    
T  40521033 gaacgaacctaac-tatcattcttacaaacaacaaattaaaatatgacacgtcat 40521086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 313
Target Start/End: Complemental strand, 7298883 - 7298833
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgt 313  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||| ||||||    
T  7298883 gaacgaacctaac-tatcattcttacaaacaacaaattaaaacataacacgt 7298833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 26646020 - 26646077
Alignment:
Q  108 tttgtattaaaaaataacaattatgatgtgttctaatcctctcttattctcttactat 165  Q
    ||||||||||  |||||||| |||| ||||||||||| |||| |||||||||||||||    
T  26646020 tttgtattaattaataacaactatggtgtgttctaattctcttttattctcttactat 26646077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 19805661 - 19805609
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    |||||||  |||| |||||| |||| ||| |||||||||||||||||||||||    
T  19805661 gaacgaacttaacctatcatccttataaataacaaattaaaacatgacacgtc 19805609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 19580557 - 19580501
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19580557 gaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacatgtcattg 19580501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 36635485 - 36635429
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36635485 gaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattg 36635429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 36274136 - 36274188
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  36274136 gaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 36274188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 27073155 - 27073103
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||    
T  27073155 gaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtc 27073103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 33214460 - 33214512
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||    
T  33214460 gaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtc 33214512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 36274372 - 36274320
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||||||||| ||||||  |||||||||||||||||||||||||||||||    
T  36274372 gaacgaatctaacctatcatctttacaaacaacaaattaaaacatgacacgtc 36274320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 261
Target Start/End: Original strand, 6079717 - 6079895
Alignment:
Q  88 ttatcttatgtctaaaattgtttgtattaaaaaataacaattatgatgtgttctaatcctctcttattctcttact--------atatctttttattgat 179  Q
    ||||||||||| || || | |||  ||||| |||||||||||||  ||||||||||||||||  ||||| ||||||        |||||| |||||| ||    
T  6079717 ttatcttatgtttacaactatttcaattaataaataacaattatagtgtgttctaatcctct--tattcacttactgtctatttatatctctttattcat 6079814  T
Q  180 ggaataactggctactcgaaagtaacattttcttttttaacttatcacttttatttagatatatgcgtttgcgcagtagaaa 261  Q
     ||||| ||  ||| || |||||| ||||||||||| |||| ||||| |||| | |||||||||||||| ||||||||||||    
T  6079815 agaatagcta-ctattcaaaagtagcattttcttttctaacctatcatttttgtgtagatatatgcgttagcgcagtagaaa 6079895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 10598825 - 10598877
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| ||||||  |||||||||||||||||||||||||||||||    
T  10598825 gaacgaacctaacctatcatctttacaaacaacaaattaaaacatgacacgtc 10598877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 10599044 - 10599000
Alignment:
Q  263 aacgaatctaacatatcattcttacaaacaacaaattaaaacatg 307  Q
    |||||| |||||||||||| |||||||||||||||||||||||||    
T  10599044 aacgaacctaacatatcatccttacaaacaacaaattaaaacatg 10599000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 33214686 - 33214634
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| |||||  ||||||||||||||||||||||||||||||||    
T  33214686 gaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtc 33214634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 33219089 - 33219145
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||| ||||| |||||| ||||||||||||||||||||||||||  ||||||||    
T  33219089 gaacgaacctaacctatcatccttacaaacaacaaattaaaacatgattcgtcattg 33219145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 313
Target Start/End: Original strand, 36635255 - 36635305
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgt 313  Q
    ||||||| ||||| ||||||| ||||||||||||||||||||||||||||||    
T  36635255 gaacgaacctaac-tatcattgttacaaacaacaaattaaaacatgacacgt 36635305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 308
Target Start/End: Original strand, 11651017 - 11651063
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatga 308  Q
    ||||||| ||||||||||||||||||||||||||| |||||| ||||    
T  11651017 gaacgaacctaacatatcattcttacaaacaacaatttaaaatatga 11651063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 27072930 - 27072974
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacat 306  Q
    ||||||| ||||  |||||| ||||||||||||||||||||||||    
T  27072930 gaacgaacctaatctatcatccttacaaacaacaaattaaaacat 27072974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 15332909 - 15332853
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15332909 gaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcattg 15332853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 36059334 - 36059282
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  36059334 gaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 36059282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 42028595 - 42028647
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  42028595 gaacgaacctaacctatcattcttacaaacaacaaattaaaacatgacacgtc 42028647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 31470604 - 31470659
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  31470604 gaacgaacctaac-tatcatttttacaaacaacaaattaaaacatgacacgtcattg 31470659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 38085984 - 38086035
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  38085984 gaacgaaactaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 38086035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 38086206 - 38086158
Alignment:
Q  270 ctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||    
T  38086206 ctaacatatcattcttacaaacaacaaattaaaatatgatacgtcattg 38086158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 3671838 - 3671892
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||    
T  3671838 gaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacatcatt 3671892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 31860096 - 31860151
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    ||||||| ||||| |||||| |||| ||||||||||||||||||||||||||||||    
T  31860096 gaacgaacctaacctatcatccttataaacaacaaattaaaacatgacacgtcatt 31860151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 16115061 - 16115115
Alignment:
Q  260 aagaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||||| ||||| |||||| ||||||||||||||||||||| ||||||||||    
T  16115061 aagaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtc 16115115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 2059731 - 2059679
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| |||||| ||||||||||||||||||||| ||||||||||    
T  2059731 gaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtc 2059679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 3672070 - 3672014
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    |||||||||||| |||||||| ||||||| |||||||||||| || |||||||||||    
T  3672070 gaacgaatctaatatatcatttttacaaataacaaattaaaatataacacgtcattg 3672014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 13280082 - 13280030
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| |||||| |||||||||||||||||||||||||| |||||    
T  13280082 gaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtc 13280030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 16115291 - 16115235
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||| ||||| |||||||||||||||||||||| ||||| ||||||| ||||||    
T  16115291 gaacgaacctaacctatcattcttacaaacaacaaactaaaatatgacacttcattg 16115235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 42028825 - 42028773
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| |||||| |||||||||||||||||||||||||| |||||    
T  42028825 gaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtc 42028773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 7317882 - 7317833
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacac 311  Q
    ||||||| ||||| |||||| ||||||||||| |||||||||||||||||    
T  7317882 gaacgaacctaacctatcatccttacaaacaataaattaaaacatgacac 7317833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 31860332 - 31860283
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacac 311  Q
    ||||||| ||||| || ||| |||||||||||||||||||||||||||||    
T  31860332 gaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacac 31860283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 2059507 - 2059563
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||| ||||| |||||| ||||||||||||||| ||||| ||||||| ||||||    
T  2059507 gaacgaacctaacctatcatccttacaaacaacaaactaaaatatgacacttcattg 2059563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 7317652 - 7317704
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| |||||| ||||| ||||||||| ||||||||||||||||    
T  7317652 gaacgaacctaacctatcatccttactaacaacaaactaaaacatgacacgtc 7317704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 31470824 - 31470770
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    ||||||| ||||| |||||||||||||||||||||||||||  ||||||| |||||    
T  31470824 gaacgaacctaac-tatcattcttacaaacaacaaattaaataatgacacatcatt 31470770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 24864101 - 24864031
Alignment:
Q  88 ttatcttatgtctaaaattgtttgtattaaaaaataacaattatgatgtgttctaatcctctcttattctc 158  Q
    ||||||||||| ||||||| |||||||||| | |||||||  | | |||||||||||| | ||||||||||    
T  24864101 ttatcttatgtttaaaattatttgtattaatatataacaacgacggtgtgttctaatcatttcttattctc 24864031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 13279857 - 13279901
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacat 306  Q
    ||||||| ||||  |||||| ||||||||||||||||||||||||    
T  13279857 gaacgaacctaatctatcatccttacaaacaacaaattaaaacat 13279901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 262 - 313
Target Start/End: Original strand, 15864 - 15915
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgt 313  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15864 gaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgt 15915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 11147031 - 11147083
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  11147031 gaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtc 11147083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 18936924 - 18936868
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  18936924 gaacgaacctaatatatcattcttacaaacaataaattaaaacatgacacgtcattg 18936868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 37177873 - 37177817
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    |||||||  |||||||||||||||||||||||||||||||||||||| |||||||||    
T  37177873 gaacgaacataacatatcattcttacaaacaacaaattaaaacatgatacgtcattg 37177817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 5121046 - 5121000
Alignment:
Q  270 ctaacatatcattcttacaaacaacaaattaaaacatgacacgtcat 316  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  5121046 ctaacatatcattcttacaaacaacaaattaaaacatgacacatcat 5121000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 3102787 - 3102735
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||    
T  3102787 gaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtc 3102735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 18381556 - 18381500
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||    
T  18381556 gaacgaacctaacatttcattcttacaagcaacaaattaaaacatgacacatcattg 18381500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 40533980 - 40534032
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||| |||||    
T  40533980 gaacgaacctaacctatcattcttacaaacaacaaattaaaacatgatacgtc 40534032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 40534210 - 40534158
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||    
T  40534210 gaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtc 40534158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 18936706 - 18936747
Alignment:
Q  276 tatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  18936706 tatcattcttacaaacaacaaattaaaacatgatacgtcatt 18936747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 3102557 - 3102609
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| |||||| |||||||||||||||||||||||||| |||||    
T  3102557 gaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtc 3102609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 13690232 - 13690284
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| |||||| |||||||||||||||||||||||||| |||||    
T  13690232 gaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtc 13690284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 51030350 - 51030293
Alignment:
Q  108 tttgtattaaaaaataacaattatgatgtgttctaatcctctcttattctcttactat 165  Q
    ||||||||||  |||||||| |||| ||||||||||| |||| |||||||||||||||    
T  51030350 tttgtattaattaataacaactatggtgtgttctaattctcttttattctcttactat 51030293  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 9231597 - 9231649
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||| | || ||| ||||||||||||||||||||||||||||||||    
T  9231597 gaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtc 9231649  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 307
Target Start/End: Complemental strand, 9231825 - 9231782
Alignment:
Q  264 acgaatctaacatatcattcttacaaacaacaaattaaaacatg 307  Q
    ||||| ||||| |||||| |||||||||||||||||||||||||    
T  9231825 acgaacctaacctatcatccttacaaacaacaaattaaaacatg 9231782  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 317
Target Start/End: Complemental strand, 11147270 - 11147217
Alignment:
Q  263 aacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcatt 317  Q
    |||||||||||| ||| |||||||||||||| ||||||||| |||||| ||||||    
T  11147270 aacgaatctaac-tattattcttacaaacaataaattaaaatatgacatgtcatt 11147217  T

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Target: scaffold0214 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 11874 - 11822
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||    
T  11874 gaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtc 11822  T

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Target: scaffold0214; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 11643 - 11699
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattg 318  Q
    ||||||| ||||| |||||| ||||||||||||||||||||| ||||||| ||||||    
T  11643 gaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacatcattg 11699  T

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Target: scaffold0135 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 37463 - 37515
Alignment:
Q  262 gaacgaatctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 314  Q
    ||||||| ||| | || ||| ||||||||||||||||||||||||||||||||    
T  37463 gaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtc 37515  T

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Target: scaffold0135; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 307
Target Start/End: Complemental strand, 37691 - 37648
Alignment:
Q  264 acgaatctaacatatcattcttacaaacaacaaattaaaacatg 307  Q
    ||||| ||||| |||||| |||||||||||||||||||||||||    
T  37691 acgaacctaacctatcatccttacaaacaacaaattaaaacatg 37648  T

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Target: scaffold0164 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 5037 - 5111
Alignment:
Q  88 ttatcttatgtctaaaattgtttgtattaaaaaataacaattatgatgtgttctaatcctctcttattctcttac 162  Q
    ||||||||||| || || | |||  ||||| |||||||||||||  |||||| |||||||||||||||| |||||    
T  5037 ttatcttatgtttacaactatttcaattaataaataacaattatagtgtgttataatcctctcttattcacttac 5111  T

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Target: scaffold0017 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 38763 - 38722
Alignment:
Q  119 aaataacaattatgatgtgttctaatcctctcttattctctt 160  Q
    |||||||||||||  | |||||||||||||||||||||||||    
T  38763 aaataacaattatagtatgttctaatcctctcttattctctt 38722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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