View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8345_low_12 (Length: 238)
Name: NF8345_low_12
Description: NF8345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8345_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 9630844 - 9630675
Alignment:
| Q |
16 |
aagaacaaatcatcataaatattcaacttcagttgaaaaatgtttaacaaccaagtttatttacataacagatttaccaaccaaaaattcattagaaaag |
115 |
Q |
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| T |
9630844 |
aagaacaaatcatcataaatattcaatttcagttgaaaaatgtttaacaaccaagtttatttacataacagatttaccaaccaaaaattcattagaaaag |
9630745 |
T |
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| Q |
116 |
actaagaaaagttttaacgttgctgcattcccaagactggattcgagcgcaggacctgaagcccactaag |
185 |
Q |
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| T |
9630744 |
actaagaaaagttttaacgttgttgcattcccaagactggattcgagcgcaggacctgaagcccactaag |
9630675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 38743816 - 38743779
Alignment:
| Q |
122 |
aaaagttttaacgttgctgcattcccaagactggattc |
159 |
Q |
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| T |
38743816 |
aaaagttttaacgttgctgcatgcccaagactagattc |
38743779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 9679473 - 9679512
Alignment:
| Q |
181 |
ctaagagcacaaatatcggcagtgtcttttggcacataag |
220 |
Q |
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| T |
9679473 |
ctaagagcacaaatatcggcagtgtcttttggcacataag |
9679512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 17312637 - 17312676
Alignment:
| Q |
181 |
ctaagagcacaaatatcggcagtgtcttttggcacataag |
220 |
Q |
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| T |
17312637 |
ctaagagcacaaatatcggcagtgtcttttggcacataag |
17312676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 9268633 - 9268595
Alignment:
| Q |
182 |
taagagcacaaatatcggcagtgtcttttggcacataag |
220 |
Q |
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| T |
9268633 |
taagagcacaaatatcggcagtgtcttttggcacataag |
9268595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 2680895 - 2680931
Alignment:
| Q |
184 |
agagcacaaatatcggcagtgtcttttggcacataag |
220 |
Q |
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| T |
2680895 |
agagcacaaatatcgacagtgtcttttggcacataag |
2680931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 9066120 - 9066153
Alignment:
| Q |
128 |
tttaacgttgctgcattcccaagactggattcga |
161 |
Q |
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| T |
9066120 |
tttaacgttgctgcatacccaagactggattcga |
9066153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 7242873 - 7242909
Alignment:
| Q |
125 |
agttttaacgttgctgcattcccaagactggattcga |
161 |
Q |
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| T |
7242873 |
agttttaacgttgctgcatgtccaagactggattcga |
7242909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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