View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8345_low_13 (Length: 226)

Name: NF8345_low_13
Description: NF8345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8345_low_13
NF8345_low_13
[»] chr2 (4 HSPs)
chr2 (1-209)||(4568957-4569166)
chr2 (27-165)||(38576907-38577041)
chr2 (17-114)||(2248953-2249050)
chr2 (88-165)||(16576280-16576353)
[»] chr1 (9 HSPs)
chr1 (17-85)||(45136764-45136832)
chr1 (35-166)||(15321020-15321147)
chr1 (9-64)||(67712-67767)
chr1 (114-157)||(68151-68194)
chr1 (25-99)||(34601641-34601715)
chr1 (73-114)||(7749020-7749061)
chr1 (25-162)||(38839634-38839765)
chr1 (121-165)||(3367843-3367887)
chr1 (121-161)||(5500792-5500832)
[»] chr8 (3 HSPs)
chr8 (77-165)||(35574610-35574694)
chr8 (114-165)||(29093590-29093641)
chr8 (17-85)||(39280914-39280982)
[»] chr7 (4 HSPs)
chr7 (18-67)||(8448076-8448125)
chr7 (77-150)||(32138871-32138940)
chr7 (2-47)||(758029-758074)
chr7 (70-139)||(34891547-34891612)
[»] chr5 (5 HSPs)
chr5 (77-150)||(2243301-2243370)
chr5 (29-165)||(40483655-40483786)
chr5 (3-108)||(972776-972881)
chr5 (27-165)||(22780314-22780448)
chr5 (121-165)||(22780145-22780189)
[»] chr3 (2 HSPs)
chr3 (23-115)||(54437604-54437696)
chr3 (116-165)||(20519434-20519483)
[»] chr6 (1 HSPs)
chr6 (121-165)||(32342661-32342705)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 4568957 - 4569166
Alignment:
Q  1 ggatgaattggaggtgatttacccctatcaaagaaaaaactcattttcttcatctctattattataac-gagttattattttcatcctaagaacatcaaa 99  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  4568957 ggatgaattggaggtgatttatacctatcaaagaaaaaactcattttcttcatctctattattataaccgagttattattttcatcctaaaaacatcaaa 4569056  T
Q  100 tttcttcatattcttccttccttcaacatgtgatctccatctttttcgttccaaaatcaaatcataaaaatcttttttgcataaatttgaacacatgaaa 199  Q
    |||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4569057 tttcttcatatctttccttctttcaacatgtgatctccatctttttcgttccaaaatcaaatcataaaaatcttttttgcataaatttgaacacatgaaa 4569156  T
Q  200 atagttgtta 209  Q
    ||||||||||    
T  4569157 atagttgtta 4569166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 38577041 - 38576907
Alignment:
Q  27 atcaaagaaaaaactcattttcttcatctctattattataacgagttattattttcatcctaagaacatcaaatttcttcatattcttccttccttcaac 126  Q
    |||||||||||| |||||||||||||| | |||| ||||||  |||||  |||||||||  |||||||| ||| ||||||||     || ||| ||||||    
T  38577041 atcaaagaaaaatctcattttcttcatatttatttttataatcagttaccattttcatctaaagaacattaaagttcttcat----ctctttcattcaac 38576946  T
Q  127 atgtgatctccatctttttcgttccaaaatcaaatcata 165  Q
    ||||||| ||||||| |||||| ||| ||||||||||||    
T  38576945 atgtgatttccatctctttcgtaccataatcaaatcata 38576907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 2249050 - 2248953
Alignment:
Q  17 atttacccctatcaaagaaaaaactcattttcttcatctctattattataacgagttattattttcatcctaagaacatcaaatttcttcatattctt 114  Q
    ||||||| |||||||||||||| |  ||||||||||||| |||| ||| ||  |||||  |||||||||  || ||||| ||| |||||||| |||||    
T  2249050 atttacctctatcaaagaaaaatcatattttcttcatctttattcttagaattagttaccattttcatctcaaaaacattaaacttcttcatcttctt 2248953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 16576280 - 16576353
Alignment:
Q  88 aagaacatcaaatttcttcatattcttccttccttcaacatgtgatctccatctttttcgttccaaaatcaaatcata 165  Q
    |||||||||||| ||||||||     |||||| ||||||||||||||||| |||  ||||||||| |||| |||||||    
T  16576280 aagaacatcaaacttcttcat----ctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcata 16576353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 45136832 - 45136764
Alignment:
Q  17 atttacccctatcaaagaaaaaactcattttcttcatctctattattataacgagttattattttcatc 85  Q
    |||||||||||||||||||||| |||||||||||||||| |||| ||| ||  ||||||||||||||||    
T  45136832 atttacccctatcaaagaaaaatctcattttcttcatctttattcttacaatcagttattattttcatc 45136764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 166
Target Start/End: Original strand, 15321020 - 15321147
Alignment:
Q  35 aaaaactcattttcttcatctctattattataacgagttattattttcatcctaagaacatcaaatttcttcatattcttccttccttcaacatgtgatc 134  Q
    |||||||||||||||||||||  ||||||| |||||||| | |||||| ||  || ||||| |||||| ||||||    |||||| |||||||||| |||    
T  15321020 aaaaactcattttcttcatcttaattattacaacgagttgtcattttcttctcaaaaacattaaattttttcata----tccttcattcaacatgtaatc 15321115  T
Q  135 tccatctttttcgttccaaaatcaaatcataa 166  Q
    | ||||| |||| || || |||||||||||||    
T  15321116 ttcatctctttcatttcagaatcaaatcataa 15321147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 67712 - 67767
Alignment:
Q  9 tggaggtgatttacccctatcaaagaaaaaactcattttcttcatctctattatta 64  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||||||| ||||||||    
T  67712 tggaggtaatttacctctatcaaagaaaagactcattttcttcatctttattatta 67767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 157
Target Start/End: Original strand, 68151 - 68194
Alignment:
Q  114 tccttccttcaacatgtgatctccatctttttcgttccaaaatc 157  Q
    |||||| || ||||||||||||||||||||||||||||||||||    
T  68151 tccttcatttaacatgtgatctccatctttttcgttccaaaatc 68194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 34601715 - 34601641
Alignment:
Q  25 ctatcaaagaaaaaactcattttcttcatctctattattataacgagttattattttcatcctaagaacatcaaa 99  Q
    |||| ||||||||| |||||||||||||||| |||| |||  |  ||||||||||||||||  || |||||||||    
T  34601715 ctataaaagaaaaatctcattttcttcatctttattcttacgattagttattattttcatctcaaaaacatcaaa 34601641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 7749020 - 7749061
Alignment:
Q  73 tattattttcatcctaagaacatcaaatttcttcatattctt 114  Q
    |||||||||||||  ||||||||||||||||||||| |||||    
T  7749020 tattattttcatctcaagaacatcaaatttcttcattttctt 7749061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 38839765 - 38839634
Alignment:
Q  25 ctatcaaagaaaaaactcattttcttcatctctattattataacgagttattattttcatcctaagaacatcaaatttcttcatattcttccttccttca 124  Q
    |||||||||||||| || ||||| ||||||| |||| ||| ||  |||||  |||||||||  ||||||||||||  ||||||| |||||| |||         
T  38839765 ctatcaaagaaaaatctaatttttttcatctttattcttacaattagtta--attttcatctcaagaacatcaaacctcttcatcttcttcattcg---- 38839672  T
Q  125 acatgtgatctccatctttttcgttccaaaatcaaatc 162  Q
    |||||||||||  ||||| ||||||||| |||| ||||    
T  38839671 acatgtgatcttgatcttcttcgttccacaatcgaatc 38839634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 3367843 - 3367887
Alignment:
Q  121 ttcaacatgtgatctccatctttttcgttccaaaatcaaatcata 165  Q
    ||||||||||||||||||||| |||||||||| ||| | ||||||    
T  3367843 ttcaacatgtgatctccatctctttcgttccagaattatatcata 3367887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 5500832 - 5500792
Alignment:
Q  121 ttcaacatgtgatctccatctttttcgttccaaaatcaaat 161  Q
    |||||||||||||||||||||| |||||| || ||||||||    
T  5500832 ttcaacatgtgatctccatcttattcgtttcagaatcaaat 5500792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 35574694 - 35574610
Alignment:
Q  77 attttcatcctaagaacatcaaatttcttcatattcttccttccttcaacatgtgatctccatctttttcgttccaaaatcaaatcata 165  Q
    ||||||||| |||||||||||||||| ||||| |    | ||| |||||||||| |||||||||||||||||||||||||| |||||||    
T  35574694 attttcatcttaagaacatcaaattttttcatct----cattcattcaacatgtcatctccatctttttcgttccaaaatcgaatcata 35574610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 165
Target Start/End: Original strand, 29093590 - 29093641
Alignment:
Q  114 tccttccttcaacatgtgatctccatctttttcgttccaaaatcaaatcata 165  Q
    |||||| ||||||||||||||||||||| |||||||||| ||||||||||||    
T  29093590 tccttcattcaacatgtgatctccatctctttcgttccataatcaaatcata 29093641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 39280914 - 39280982
Alignment:
Q  17 atttacccctatcaaagaaaaaactcattttcttcatctctattattataacgagttattattttcatc 85  Q
    |||||||||||||||||||||| | | |||||||||||| |||| ||| ||  |||||  |||||||||    
T  39280914 atttacccctatcaaagaaaaatccccttttcttcatctttattcttaaaatcagttaccattttcatc 39280982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 8448125 - 8448076
Alignment:
Q  18 tttacccctatcaaagaaaaaactcattttcttcatctctattattataa 67  Q
    ||||| |||||||||||||||||||||||||||||||| |||||| ||||    
T  8448125 tttacacctatcaaagaaaaaactcattttcttcatctttattatgataa 8448076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 32138940 - 32138871
Alignment:
Q  77 attttcatcctaagaacatcaaatttcttcatattcttccttccttcaacatgtgatctccatctttttcgttc 150  Q
    ||||||||| ||||||||||||| ||||||||     |||||| |||||||||| ||||||||||| |||||||    
T  32138940 attttcatcttaagaacatcaaaattcttcat----ctccttcgttcaacatgtaatctccatcttcttcgttc 32138871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 758074 - 758029
Alignment:
Q  2 gatgaattggaggtgatttacccctatcaaagaaaaaactcatttt 47  Q
    ||||||||| | || |||||||||||||||||||||| ||||||||    
T  758074 gatgaattgcatgtaatttacccctatcaaagaaaaatctcatttt 758029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 34891547 - 34891612
Alignment:
Q  70 agttattattttcatcctaagaacatcaaatttcttcatattcttccttccttcaacatgtgatctccat 139  Q
    |||||| ||||| |||  |||||||||||||||||||||     |||||| |||||||||||||||||||    
T  34891547 agttatcattttgatctcaagaacatcaaatttcttcat----ctccttcattcaacatgtgatctccat 34891612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 2243370 - 2243301
Alignment:
Q  77 attttcatcctaagaacatcaaatttcttcatattcttccttccttcaacatgtgatctccatctttttcgttc 150  Q
    |||||||||  |||||||||||| ||||||||||    ||||| |||||||||||||||||||||| |||||||    
T  2243370 attttcatctcaagaacatcaaacttcttcatat----ccttcattcaacatgtgatctccatcttcttcgttc 2243301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 165
Target Start/End: Original strand, 40483655 - 40483786
Alignment:
Q  29 caaagaaaaaactcattttcttcatctctattattataacgagttattattttcatcctaagaacatcaaatttcttcatattcttccttccttcaacat 128  Q
    ||||||||||| ||||||| ||||||| |||| ||| ||  | ||| |||||||||| ||| ||||||||| |||||||| |    |  || ||||||||    
T  40483655 caaagaaaaaattcatttttttcatctttattcttaaaaatatttactattttcatc-taaaaacatcaaacttcttcatct----cactcattcaacat 40483749  T
Q  129 gtgatctccatctttttcgttccaaaatcaaatcata 165  Q
    ||||||| |||||  |||||||||||||| |||||||    
T  40483750 gtgatcttcatctcattcgttccaaaatcgaatcata 40483786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 972776 - 972881
Alignment:
Q  3 atgaattggaggtgatttacccctatcaaagaaaaaactcattttcttcatctctattattataacgagttattattttcatcctaagaacatcaaattt 102  Q
    |||| |||| ||| ||||| || | |||||||||||| ||||||| ||| ||| |||| ||| ||  |||||| |||||||||  |||||||||||| ||    
T  972776 atgatttgggggtaatttatccatttcaaagaaaaaattcatttttttcctctttatttttaaaattagttatcattttcatctcaagaacatcaaactt 972875  T
Q  103 cttcat 108  Q
    ||||||    
T  972876 cttcat 972881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 22780448 - 22780314
Alignment:
Q  27 atcaaagaaaaaactcattttcttcatctctattattataacgagttattattttcatcctaagaacatcaaatttcttcatattcttccttccttcaac 126  Q
    |||||||||||||||||||||||| |||| || ||||  || |||| |  |||||||||  || ||||  ||| |||||||||    |||||| ||||||    
T  22780448 atcaaagaaaaaactcattttcttaatctttactatttcaatgagtcaccattttcatctcaaaaacaataaacttcttcata----tccttcattcaac 22780353  T
Q  127 atgtgatctccatctttttcgttccaaaatcaaatcata 165  Q
    ||||||||| ||||  |||||||  | ||||||||||||    
T  22780352 atgtgatcttcatccctttcgttttagaatcaaatcata 22780314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 22780189 - 22780145
Alignment:
Q  121 ttcaacatgtgatctccatctttttcgttccaaaatcaaatcata 165  Q
    |||||||||||||||| || |||||||||| ||||| ||||||||    
T  22780189 ttcaacatgtgatctctatgtttttcgttctaaaattaaatcata 22780145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 54437604 - 54437696
Alignment:
Q  23 ccctatcaaagaaaaaactcattttcttcatctctattattataacgagttattattttcatcctaagaacatcaaatttcttcatattcttc 115  Q
    ||||||||||| |||||||||||||| |||||| |||||||| ||| | |||  |||||||||  || ||||| ||| |||||||||| ||||    
T  54437604 ccctatcaaaggaaaaactcattttcctcatctttattattacaacaaattaccattttcatctcaataacattaaacttcttcatatccttc 54437696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 20519483 - 20519434
Alignment:
Q  116 cttccttcaacatgtgatctccatctttttcgttccaaaatcaaatcata 165  Q
    |||| |||||| |||||| ||||||||||||||||||||||  |||||||    
T  20519483 cttcattcaacgtgtgatatccatctttttcgttccaaaattgaatcata 20519434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 32342661 - 32342705
Alignment:
Q  121 ttcaacatgtgatctccatctttttcgttccaaaatcaaatcata 165  Q
    ||||||||| |||||| || |||||||||||| ||||||||||||    
T  32342661 ttcaacatgcgatctctatttttttcgttccagaatcaaatcata 32342705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University