View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8345_low_9 (Length: 306)
Name: NF8345_low_9
Description: NF8345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8345_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 37 - 290
Target Start/End: Original strand, 31982379 - 31982632
Alignment:
| Q |
37 |
gaggtccattagatcaaagaagtgatgcctgtaaaaagagacacttataaagctggagggggaaaattcattatattgaacaatatattctcatctaagt |
136 |
Q |
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| T |
31982379 |
gaggcccattagatcaaagaagtgatgcctgtaaaaagagacacttataaagctggagggggaaaattcattatattgaacaatatattcttatctaagt |
31982478 |
T |
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| Q |
137 |
cnnnnnnnagaatacttttagaatttctctcaagacatttcactaaacagctcacttgttaattgttataaccatcttgtatttacatatgtgcacatag |
236 |
Q |
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| T |
31982479 |
ctttttttaaaatacttttagaatttctctcaagacatttcactaaacagctcatttgttaattgttataaccatcttgtatttacatatgtgcacagag |
31982578 |
T |
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| Q |
237 |
tgtgtaagctaattttaatatataaatgcaggaacttaaaggaaaacaagtaac |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31982579 |
tgtgtaagctaattttaatatataaatgcaggaacttaaaggaaaacaagtaac |
31982632 |
T |
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