View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8346_low_1 (Length: 266)
Name: NF8346_low_1
Description: NF8346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8346_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 40804417 - 40804178
Alignment:
| Q |
18 |
gaagaaacaaagatattaaagggtcgtcattgtcaagaaattgatatgtattgttccctttattaggcttgaaacaccaatgatttatgaccagtcactt |
117 |
Q |
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| T |
40804417 |
gaagaaacaaagatattaaagggtcgtcattgtcaagaaattgatatgtattgttccctttattaggcttgaaacaccaatgatttatgaccagtcgctt |
40804318 |
T |
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| Q |
118 |
atctttcctcttaaaaacttgagttgagtcaataattgattaagcattaatgactgagtttaaatatgttctttgactgtgttgagattcaaatatatta |
217 |
Q |
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| T |
40804317 |
atctttcctcttaaaaacttgagttgagtcaataattgattaagcattaatgactgagtttaaatatgttctttgactgtgttgagattcaaatatatta |
40804218 |
T |
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| Q |
218 |
ccaattatgtttctcttttgttttaatcccttgatgatgt |
257 |
Q |
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| T |
40804217 |
ccaattatgtttctcttttgttttagtcccttgatgatgt |
40804178 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 5115901 - 5115847
Alignment:
| Q |
44 |
tcattgtcaagaaattgatatgtattgttccctttattaggcttgaaacaccaat |
98 |
Q |
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| T |
5115901 |
tcattgtcaagaaaatgatatgtcttgttcctgttattgggcttgaaacaccaat |
5115847 |
T |
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