View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8347_low_2 (Length: 468)

Name: NF8347_low_2
Description: NF8347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8347_low_2
NF8347_low_2
[»] chr4 (8 HSPs)
chr4 (248-453)||(56297103-56297308)
chr4 (72-174)||(56297381-56297486)
chr4 (372-453)||(29665029-29665111)
chr4 (18-71)||(56297572-56297625)
chr4 (88-167)||(39591647-39591724)
chr4 (35-70)||(47668230-47668265)
chr4 (37-71)||(39591861-39591895)
chr4 (37-71)||(52980508-52980542)
[»] chr5 (1 HSPs)
chr5 (346-454)||(15857060-15857170)
[»] chr8 (4 HSPs)
chr8 (346-453)||(34616726-34616835)
chr8 (329-366)||(24068904-24068941)
chr8 (396-453)||(7796273-7796331)
chr8 (396-453)||(7815549-7815607)
[»] chr3 (4 HSPs)
chr3 (338-454)||(43345889-43346013)
chr3 (372-453)||(48253496-48253578)
chr3 (35-71)||(5690396-5690432)
chr3 (35-70)||(47765887-47765922)
[»] scaffold0687 (1 HSPs)
scaffold0687 (396-453)||(6116-6174)
[»] scaffold0025 (1 HSPs)
scaffold0025 (24-70)||(56287-56333)
[»] chr6 (1 HSPs)
chr6 (38-70)||(18139112-18139144)
[»] chr1 (1 HSPs)
chr1 (35-71)||(33795274-33795310)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 8e-96; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 248 - 453
Target Start/End: Complemental strand, 56297308 - 56297103
Alignment:
Q  248 gccgttaatcctccaaccaatttgaatcactcaataaccttcaatataaaaaacaagaataaattaaactcataaattcagaaattgaatcaaatgggtt 347  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  56297308 gccgttaatcctccaaccaatttgaatcaatcaataaccttcaatatgaaaaacaagaataaattaaactcataaattcagaaattgaatcaaatggctt 56297209  T
Q  348 tgaaggaattggattcaaacccctaaattcaatgatctagaagctcgtatctagaacccagaaattcaatgatttaaaacaaggataaattaaatgaatt 447  Q
     ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  56297208 ggaaggaattggattcaaacccataaattcaatgatctagaagctcgtatctagaacctagaaattcaatgatttaaaacaagaataaattaaatgaatt 56297109  T
Q  448 caaaac 453  Q
    ||||||    
T  56297108 caaaac 56297103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 56297486 - 56297381
Alignment:
Q  72 ttttattcaacaaca---acaacactgccacgtaatcttcattttccttccttcttcatagttctttttgtttgtaaattttttatgtttatttaatcac 168  Q
    |||||||||||||||   ||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  56297486 ttttattcaacaacaacgacaacactgtcacgtaatcttcatgttccttccttcttcatagttttttttgtttgtaaattttttatgtttatttaatcac 56297387  T
Q  169 aaccca 174  Q
    ||||||    
T  56297386 aaccca 56297381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 372 - 453
Target Start/End: Complemental strand, 29665111 - 29665029
Alignment:
Q  372 aaattcaatgatctagaagctcgtatctagaacccagaaattcaatgatt-taaaacaaggataaattaaatgaattcaaaac 453  Q
    |||||||||||||||||||||   |||||||||||||||||||||| |||  |||| ||| ||||||||||||||||||||||    
T  29665111 aaattcaatgatctagaagcttagatctagaacccagaaattcaataattcaaaaataagaataaattaaatgaattcaaaac 29665029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 56297625 - 56297572
Alignment:
Q  18 gaatcgtcaacaatagtagcaacaacaataccaaatcaaattcaaccctttttg 71  Q
    ||||| |||||||||| |||||||||||||||||||||||||||| ||||||||    
T  56297625 gaatcatcaacaatagcagcaacaacaataccaaatcaaattcaatcctttttg 56297572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 39591724 - 39591647
Alignment:
Q  88 caacactgccacgtaatcttcattttccttccttcttcatagttctttttgtttgtaaattttttatgtttatttaatca 167  Q
    ||||||||||||||||||||| |  || |||||||||||| ||  || || ||||||||||||| ||||||| |||||||    
T  39591724 caacactgccacgtaatcttcctcatcattccttcttcatcgt--ttcttttttgtaaatttttcatgtttaattaatca 39591647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 47668265 - 47668230
Alignment:
Q  35 agcaacaacaataccaaatcaaattcaacccttttt 70  Q
    ||||||||||||| ||||||||||||||||||||||    
T  47668265 agcaacaacaatagcaaatcaaattcaacccttttt 47668230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 39591895 - 39591861
Alignment:
Q  37 caacaacaataccaaatcaaattcaaccctttttg 71  Q
    ||||||||||| |||||||||||||||||||||||    
T  39591895 caacaacaatatcaaatcaaattcaaccctttttg 39591861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 52980508 - 52980542
Alignment:
Q  37 caacaacaataccaaatcaaattcaaccctttttg 71  Q
    ||||||||||| |||||||||||||||||||||||    
T  52980508 caacaacaatatcaaatcaaattcaaccctttttg 52980542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 346 - 454
Target Start/End: Complemental strand, 15857170 - 15857060
Alignment:
Q  346 tttgaaggaattggattcaaacccct-aaattcaatgatctagaagctcgtatctagaacccagaaattcaatgattt-aaaacaaggataaattaaatg 443  Q
    ||||||| ||||||||||||| |||  ||||||||||||||||||||||  |||||||||||| || ||||||||||| |||||||| ||||||||||||    
T  15857170 tttgaagaaattggattcaaaacccagaaattcaatgatctagaagctcagatctagaacccaaaatttcaatgatttaaaaacaagaataaattaaatg 15857071  T
Q  444 aattcaaaact 454  Q
    |||| ||||||    
T  15857070 aattaaaaact 15857060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 34616726 - 34616835
Alignment:
Q  346 tttgaaggaattggattcaaacccc-taaattcaatgatctagaagctcgtatctagaacccagaaattcaatgatt-taaaacaaggataaattaaatg 443  Q
    ||||||||||||||||||||| ||| ||||| |||||||| | ||||||  |||||||||||| |||||||||||||  |||||||| ||||||||||||    
T  34616726 tttgaaggaattggattcaaaacccataaatgcaatgatccataagctcagatctagaacccaaaaattcaatgattcaaaaacaagaataaattaaatg 34616825  T
Q  444 aattcaaaac 453  Q
    ||||||||||    
T  34616826 aattcaaaac 34616835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 366
Target Start/End: Original strand, 24068904 - 24068941
Alignment:
Q  329 aaattgaatcaaatgggtttgaaggaattggattcaaa 366  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24068904 aaattgaatcaaatgggtttgaaggaattggattcaaa 24068941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 453
Target Start/End: Original strand, 7796273 - 7796331
Alignment:
Q  396 atctagaacccagaaattcaatgatttaaaa-caaggataaattaaatgaattcaaaac 453  Q
    |||||||||| | ||||||||||||| |||| |||| || |||||||||||||||||||    
T  7796273 atctagaacctataaattcaatgattcaaaaacaagaattaattaaatgaattcaaaac 7796331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 453
Target Start/End: Original strand, 7815549 - 7815607
Alignment:
Q  396 atctagaacccagaaattcaatgatttaaaa-caaggataaattaaatgaattcaaaac 453  Q
    |||||||||| | ||||||||||||| |||| |||| || |||||||||||||||||||    
T  7815549 atctagaacctataaattcaatgattcaaaaacaagaattaattaaatgaattcaaaac 7815607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 338 - 454
Target Start/End: Original strand, 43345889 - 43346013
Alignment:
Q  338 caaatgggtttgaaggaattggattcaaacccc-taaattcaatgatctagaagctcgtatctagaacccagaaattcaatgatttaa-------aacaa 429  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||   |||||||||||| || |||||||||| ||       |||||    
T  43345889 caaatggatttgaaggaattggattcaaaacccataaattcaatgatctagaagcttagatctagaacccaaaacttcaatgattcaaaaacaagaacaa 43345988  T
Q  430 ggataaattaaatgaattcaaaact 454  Q
    | |||||||||||||||| ||||||    
T  43345989 gaataaattaaatgaattaaaaact 43346013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 453
Target Start/End: Original strand, 48253496 - 48253578
Alignment:
Q  372 aaattcaatgatctagaagctcgtatctagaacccagaaattcaatgatttaaaa-caaggataaattaaatgaattcaaaac 453  Q
    |||||||||||||||||||||   |||||||| ||||||||| ||| ||| |||| |||| ||||||||||||||||||||||    
T  48253496 aaattcaatgatctagaagcttagatctagaatccagaaattaaataattcaaaagcaagaataaattaaatgaattcaaaac 48253578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 5690396 - 5690432
Alignment:
Q  35 agcaacaacaataccaaatcaaattcaaccctttttg 71  Q
    ||||||||||||| |||||||||||||||||||||||    
T  5690396 agcaacaacaatatcaaatcaaattcaaccctttttg 5690432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 47765887 - 47765922
Alignment:
Q  35 agcaacaacaataccaaatcaaattcaacccttttt 70  Q
    ||||||||||||| ||||||||||||||||||||||    
T  47765887 agcaacaacaatagcaaatcaaattcaacccttttt 47765922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 453
Target Start/End: Complemental strand, 6174 - 6116
Alignment:
Q  396 atctagaacccagaaattcaatgatttaaaa-caaggataaattaaatgaattcaaaac 453  Q
    |||||||||| | ||||||||||||| |||| |||| || |||||||||||||||||||    
T  6174 atctagaacctataaattcaatgattcaaaaacaagaattaattaaatgaattcaaaac 6116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 56333 - 56287
Alignment:
Q  24 tcaacaatagtagcaacaacaataccaaatcaaattcaacccttttt 70  Q
    ||||||| || |||||||||| ||||||||||||||||||| |||||    
T  56333 tcaacaacagcagcaacaacattaccaaatcaaattcaaccattttt 56287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 18139144 - 18139112
Alignment:
Q  38 aacaacaataccaaatcaaattcaacccttttt 70  Q
    |||||||||| ||||||||||||||||||||||    
T  18139144 aacaacaatagcaaatcaaattcaacccttttt 18139112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 33795310 - 33795274
Alignment:
Q  35 agcaacaacaataccaaatcaaattcaaccctttttg 71  Q
    |||| |||||||||||||| |||||||||||||||||    
T  33795310 agcatcaacaataccaaattaaattcaaccctttttg 33795274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University