View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8347_low_3 (Length: 249)
Name: NF8347_low_3
Description: NF8347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8347_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 36808566 - 36808334
Alignment:
| Q |
1 |
ctaaattcaccatcaatnnnnnnnnttgcaattcaattttgttcactcctagcagttagatagatgcgtacacttaggttgtgagacttctccttatata |
100 |
Q |
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| T |
36808566 |
ctaaattcaccatcaataaaaaaaattgcaattcaattttgttcactcctagcagttagatagatgcgtacacttaggttgtgagacttctccttatata |
36808467 |
T |
|
| Q |
101 |
tttgaatttgagcctcaagcttcctatatgcctcattcttatactcaaaattaccacatttgccgtaataaggaaagtcggaatcgtcatgcttagagaa |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36808466 |
tttgaatttgagcctt--gcttcctatatgcctcattcttatactcaaaattaccacgtttgccgtaatatggaaagtcggaatcgtcatgcttagagaa |
36808369 |
T |
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| Q |
201 |
gtacgtcacaagatcttcaacgggttctgttccat |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
36808368 |
gtacgtcacaagatcttcaacgggttctgttccat |
36808334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 57 - 200
Target Start/End: Original strand, 36512295 - 36512438
Alignment:
| Q |
57 |
tagatagatgcgtacacttaggttgtgagacttctccttatatatttgaatttgagcctcaagcttcctatatgcctcattcttatactcaaaattacca |
156 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36512295 |
tagatagatgcgtacacttaggttgcgagacttctccttatagatttgaatttgagcctcaagcagcctatatgcctcattcttatactcaaaattacca |
36512394 |
T |
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| Q |
157 |
catttgccgtaataaggaaagtcggaatcgtcatgcttagagaa |
200 |
Q |
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| |||| ||| ||||||||||||||||||||||| ||||||||| |
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| T |
36512395 |
cttttgacgtgataaggaaagtcggaatcgtcatacttagagaa |
36512438 |
T |
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