View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8347_low_4 (Length: 241)
Name: NF8347_low_4
Description: NF8347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8347_low_4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 36809082 - 36808855
Alignment:
| Q |
10 |
acatcacaccagctagagctaagagtctaagacaaacaacatacatcagttcaagagctaaaacaagctatactaggaacatcccaaagtttaagtgtac |
109 |
Q |
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| T |
36809082 |
acatcacaccagctagagctaagagtctaagacaaacaacatacatcagttcaagagctaaaacaagcta--ctaggaacatcccaaagtttaagt--ac |
36808987 |
T |
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| Q |
110 |
accaatgaccaaccaaaaaatactcaatcatatcctgaaatattaatccaagtgttgtatactcagtaatcagaccagcatatttgaagcaaccacaata |
209 |
Q |
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| T |
36808986 |
accaatgaccaaccaaaaaatactcaatcatatcctgaaatattaatccaagtgttgtatactcggtaatcagaccagcatatttgaagcaaccacaata |
36808887 |
T |
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| Q |
210 |
tcatacatctagccatagccattttgattctc |
241 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
36808886 |
tcatacatctagccatagccattttgattctc |
36808855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 36509735 - 36509831
Alignment:
| Q |
29 |
taagagtctaagacaaacaacatacatcagttcaagagctaaaacaagctatactaggaacatcccaaagtttaagtgtacaccaatgaccaaccaaaaa |
128 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||||||||| |||| ||||||| |||||||||||||||||||||| | ||||||||| |
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| T |
36509735 |
taagagtctaagacaaacaacatacattagtt-aagagctaaaacaagcta--ctag-aacatccaaaagtttaagtgtacaccaatggcaaaccaaaaa |
36509830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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