View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8348_high_4 (Length: 346)
Name: NF8348_high_4
Description: NF8348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8348_high_4 |
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| [»] scaffold0713 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 14648765 - 14648652
Alignment:
| Q |
1 |
acaaagacgaaagaggaatacgggaaagagaatgagcaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttcatttaatta |
100 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14648765 |
acaaagaggaaagaggaatacgggaaagagaatgagaaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttcatttaatta |
14648666 |
T |
|
| Q |
101 |
ctattattttaatt |
114 |
Q |
| |
|
|||||||||||||| |
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|
| T |
14648665 |
ctattattttaatt |
14648652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 14658555 - 14658442
Alignment:
| Q |
1 |
acaaagacgaaagaggaatacgggaaagagaatgagcaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttcatttaatta |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14658555 |
acaaagaggaaagaggaatacgggaaagagaatgagaaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttcatttaatta |
14658456 |
T |
|
| Q |
101 |
ctattattttaatt |
114 |
Q |
| |
|
|||||||||||||| |
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|
| T |
14658455 |
ctattattttaatt |
14658442 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 17654897 - 17654992
Alignment:
| Q |
9 |
gaaagaggaatacgggaaagagaatgagcaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttcatttaattactattatt |
108 |
Q |
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||||||| ||||||||||||||| ||| |||||||||| ||||||||||||||||||||| ||| | || ||| |||||||||||||||||||||| |
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| T |
17654897 |
gaaagagtgatacgggaaagagaaagag-aaagggtgtgagggaaaaatctagtagcttccgtgtctggtttac----atttcatttaattactattatt |
17654991 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0713
Description:
Target: scaffold0713; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 3595 - 3487
Alignment:
| Q |
1 |
acaaagacgaaagaggaatacgggaaagagaatgagcaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttcatttaatta |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3595 |
acaaagaggaaagaggaatacgggaaagagaatgagaaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctaattcatttaatta |
3496 |
T |
|
| Q |
101 |
ctattattt |
109 |
Q |
| |
|
||||||||| |
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|
| T |
3495 |
ctattattt |
3487 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 27525726 - 27525619
Alignment:
| Q |
1 |
acaaagacgaaagaggaatacgggaaagagaatgagcaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttcatttaatta |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27525726 |
acaaagaggaaagaggaatacgggaaagagaatgagaaaagggtgtgtgggaaaaatctagtagcttccatgttttgtgtacatctatttcatttaatta |
27525627 |
T |
|
| Q |
101 |
ctattatt |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
27525626 |
ctattatt |
27525619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 226 - 324
Target Start/End: Original strand, 26629201 - 26629299
Alignment:
| Q |
226 |
atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaagaagtatttgttgtggaaaaatttatatgtatgaactt |
324 |
Q |
| |
|
||||||| |||||||| ||||||| | ||||||||| |||| ||||||| ||||||||||| || ||| |||| |||||| |||||||||||||||||| |
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| T |
26629201 |
atacaaatttcatcttatatcacactgaaatagataattcaaagaattaaaaattgcaaaaaaaatatatgttttggaaacatttatatgtatgaactt |
26629299 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 226 - 324
Target Start/End: Original strand, 26735177 - 26735275
Alignment:
| Q |
226 |
atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaagaagtatttgttgtggaaaaatttatatgtatgaactt |
324 |
Q |
| |
|
||||||| |||||||| ||||||| | ||||||||| |||| ||||||| ||||||||||| || ||| |||| |||||| |||||||||||||||||| |
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|
| T |
26735177 |
atacaaatttcatcttatatcacactgaaatagataattcaaagaattaaaaattgcaaaaaaaatatatgttttggaaacatttatatgtatgaactt |
26735275 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 27423031 - 27422971
Alignment:
| Q |
226 |
atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaa |
286 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| || | | |||| ||||||||||| |
|
|
| T |
27423031 |
atacaaacttcatcttatatcacagttaaatagatagtttaagggattaaaaattgcaaaa |
27422971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 27199802 - 27199903
Alignment:
| Q |
9 |
gaaagaggaatacgggaaagagaatgagcaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttcatttaattactattatt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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|
| T |
27199802 |
gaaagaggaatacgggaaagagaatgagaaaagggtgtgtgggaaaaatctagtagcttccgtgttttgtctacatctatttcatttaattactattttt |
27199901 |
T |
|
| Q |
109 |
tt |
110 |
Q |
| |
|
|| |
|
|
| T |
27199902 |
tt |
27199903 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 64332 - 64392
Alignment:
| Q |
226 |
atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaa |
286 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| || | | |||| ||||||||||| |
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|
| T |
64332 |
atacaaacttcatcttatatcacagttaaatagatagtttaagggattaaaaattgcaaaa |
64392 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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