View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8348_low_1 (Length: 441)
Name: NF8348_low_1
Description: NF8348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8348_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 98 - 432
Target Start/End: Original strand, 36163390 - 36163726
Alignment:
| Q |
98 |
ccattcacaacctcgaacataatgctttcttggacacttctatatcttgtcttaccgtgtataattcacatatctatctagattcctctatgtccttcat |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36163390 |
ccattcacaacctcgaacataatgctttcttggacacttctatatcttgtcttaccgtgtataattcacatatctatctagattcctctatgtccttcat |
36163489 |
T |
|
| Q |
198 |
taatattcccgaccatgattactactatttgatttgattatacatatttcatcatttagttaaaattaatatactacacgaacattttctacttataggt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36163490 |
taatattcccgaccatgattactactatttgatttgattatacatatttcatcatttagttaaaattaatatactacacgaacattttctacttataggt |
36163589 |
T |
|
| Q |
298 |
tgtagtcatattgagggtttctaactc--ttcaactttacaaaattgacttgtaaaataaaaattgtcttcgtttataaatcatatgtttacaccctttt |
395 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36163590 |
tgtagtcatattgagggtttctaactcaattcaactttacaaaattgacttgtaaaatgaaaattgtctttgtttataaatcatatgtttacaccctttt |
36163689 |
T |
|
| Q |
396 |
tcgtataatgtgggggcccttagcaaatatatcgtct |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36163690 |
tcgtataatgtgggggcccttagcaaatatattgtct |
36163726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University