View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8348_low_2 (Length: 420)
Name: NF8348_low_2
Description: NF8348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8348_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 35476336 - 35476598
Alignment:
| Q |
1 |
tgacattgattgtgaggcagagaagaaaagaaagtgtaatgggggagacaaaaactgacatgctaggtgcattgttggcctctggcgaccacttttccaa |
100 |
Q |
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| T |
35476336 |
tgacattgattgtgaggcagagaagaaaagaaagtgtaatgggggagacaaaaactgacatgctaggtgcattgttggcatctggcgaccacttttccaa |
35476435 |
T |
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| Q |
101 |
tgaacaaatagtcgatttcatgttggcattgctcgtcgccggttatgaaaccacctctaccataatgacatttgcggtcaagtttctcaccgaacatcct |
200 |
Q |
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| T |
35476436 |
tgaacaaatagtcgatttcatgttggcattactcgtcgccggatatgaaaccacctctaccataatgacattcgcggtcaagtttctcaccgaacatcct |
35476535 |
T |
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| Q |
201 |
ctagcattggcacaactcaaggtaaatttaagaatttaagaatttcatttataaacatctcaa |
263 |
Q |
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| T |
35476536 |
ctagcattggcacaactcaaggtaaatttaagaatttaaggatagcatttataaacatctcaa |
35476598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 302 - 407
Target Start/End: Original strand, 35476637 - 35476742
Alignment:
| Q |
302 |
cttgtgccttaaggatacaagttagcatttctaaaagnnnnnnngtatattgttggtgcatattttttggtcaaactaatacatcacatttgttttatag |
401 |
Q |
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| T |
35476637 |
cttgtgccttaaggacacaagttagcatttctaaaagaaataaagtatattgttggtgcatattttttggtcaaactaatacatcacatttgttttgtag |
35476736 |
T |
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| Q |
402 |
tattat |
407 |
Q |
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|||||| |
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| T |
35476737 |
tattat |
35476742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 31554103 - 31554271
Alignment:
| Q |
56 |
tgacatgctaggtgcattgttggcctctggcgaccacttttccaatgaacaaatagtcgatttcatgttggcattgctcgtcgccggttatgaaaccacc |
155 |
Q |
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||||||||| || ||||||||||| ||||| || || || || || || ||||||| ||||| |||||||| |||||||| || ||||||||||| || |
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| T |
31554103 |
tgacatgcttggagcattgttggcatctggtgaacagttctcaaacgaggaaatagttgattttatgttggctttgctcgttgctggttatgaaactact |
31554202 |
T |
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| Q |
156 |
tctaccataatgacatttgcggtcaagtttctcaccgaacatcctctagcattggcacaactcaaggta |
224 |
Q |
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||||| || ||||| |||| |||| |||||||| ||| |||| |||| |||||||||||||||||| |
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| T |
31554203 |
tctacaattatgactcttgccatcaaatttctcactgaaactcctttagccttggcacaactcaaggta |
31554271 |
T |
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