View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_high_10 (Length: 450)
Name: NF8349_high_10
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 7 - 434
Target Start/End: Complemental strand, 47073082 - 47072655
Alignment:
| Q |
7 |
ttggtgttggaagcactgatttcaagagcatggaggtctacttatatccttgcctaagtttcttttccttaacatggctcctgctaagtatgctttttta |
106 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47073082 |
ttggtgttggaagcactgatttcaagagcatggaggtttacttatatccttgcctaagtttcttttccttaacatggctcctgctaagtatgctttttta |
47072983 |
T |
|
| Q |
107 |
tctgagagaataacaagtactaaggttaattattacaggtactggatgctgataatggatgtcgcttagaaagttctaccggtcgaatagctacacgaga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47072982 |
tctgagagaataacaagtactaaggttaattattacaggtactggatgctgataatggatgtcgcttagaaagttctaccggtcgaatagctacacgaga |
47072883 |
T |
|
| Q |
207 |
tatagtgcagtttgtccccatgagagaaatacaaagtaagtactagttgcttctctagttaacttgtgtaatagtctttcaattcttataactattgtgt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47072882 |
tatagtgcagtttgtccccatgagagaaatacaaagtaagtactagttgcttctctagttaacttgtgtaatagtctttcaattcttataactattgtgt |
47072783 |
T |
|
| Q |
307 |
cttttgttttattgacaccaatccatgtaccattaagttagcaggtggacaaatataatatttattactcttatatttttgctaacaatttttattcatt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47072782 |
cttttgttttattgacaccaatccatgtaccattaagttagcaggtggacaaatataatatttattactcttatatttttgctaacaatttttattcatt |
47072683 |
T |
|
| Q |
407 |
taattgaaccccattattgtgtttttga |
434 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
47072682 |
taattgaaccccattattgtgtttttga |
47072655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 132 - 251
Target Start/End: Complemental strand, 47054945 - 47054826
Alignment:
| Q |
132 |
ttaattattacaggtactggatgctgataatggatgtcgcttagaaagttctaccggtcgaatagctacacgagatatagtgcagtttgtccccatgaga |
231 |
Q |
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||||||||| |||||||||||| ||||||||||| ||||||| ||||||||| ||||| ||||| ||||||||||||| || ||||||||||||||| |
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| T |
47054945 |
ttaattatttcaggtactggatactgataatggacctcgcttaaaaagttctattggtcgtgtagctgcacgagatatagtacaatttgtccccatgaga |
47054846 |
T |
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| Q |
232 |
gaaatacaaagtaagtacta |
251 |
Q |
| |
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||| |||||||||||||||| |
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| T |
47054845 |
gaagtacaaagtaagtacta |
47054826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 7 - 345
Target Start/End: Original strand, 18232035 - 18232372
Alignment:
| Q |
7 |
ttggtgttggaagcactgatttcaagagcatggaggtctacttatatccttgcctaagtttcttttccttaacatggctcctgctaagtatgctttttta |
106 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||||||| ||| |||| || |||| |||||||||||||| || | |||| | ||||||||||| ||| |
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| T |
18232035 |
ttggtgttggaagcgctgatttcacgagcatggaggtctgcttttatcgttccctatgtttcttttccttagcacgactcccacgaagtatgctttgtta |
18232134 |
T |
|
| Q |
107 |
tctgagagaataacaagtactaaggttaattattacaggtactggatgctgataatggatgtcgcttagaaagttctaccggtcgaatagctacacgaga |
206 |
Q |
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|
||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| |||| || |||||||||| ||||| ||||||||||||| |
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|
| T |
18232135 |
tctgagagaataacatgtactaaggtttatcattacaggtactggatgctgataatggtcgtcgattgaaaagttctactggtcgtctagctacacgaga |
18232234 |
T |
|
| Q |
207 |
tatagtgcagtttgtccccatgagagaaatacaaagtaagtactagttgcttctctag-ttaacttgtgtaatagtctttcaattcttataactattgtg |
305 |
Q |
| |
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||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||| || |||||| || |||| ||||||||||||||||| ||| | |
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| T |
18232235 |
tatagtgcaatttgtccccatgagagaagtacaaagtaagtactagtcgcttctctagtttgacttgt-tagtagtttttcaattcttataacttttgag |
18232333 |
T |
|
| Q |
306 |
tcttttgttttattgacaccaatccatgtaccattaagtt |
345 |
Q |
| |
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|| |||||||||||||||| ||| |||||||||| ||||| |
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|
| T |
18232334 |
tc-tttgttttattgacacaaattcatgtaccatcaagtt |
18232372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 386 - 433
Target Start/End: Original strand, 18232465 - 18232512
Alignment:
| Q |
386 |
tgctaacaatttttattcatttaattgaaccccattattgtgtttttg |
433 |
Q |
| |
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|||||||||| |||| ||||||||||||||||||||||||| |||||| |
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| T |
18232465 |
tgctaacaatctttactcatttaattgaaccccattattgtatttttg |
18232512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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