View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8349_high_13 (Length: 429)

Name: NF8349_high_13
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8349_high_13
NF8349_high_13
[»] chr1 (13 HSPs)
chr1 (1-411)||(52516945-52517355)
chr1 (225-310)||(30882449-30882533)
chr1 (230-295)||(7347692-7347757)
chr1 (231-292)||(17473138-17473199)
chr1 (225-294)||(37143292-37143361)
chr1 (266-312)||(26238438-26238482)
chr1 (229-291)||(6025971-6026033)
chr1 (264-294)||(25634566-25634596)
chr1 (244-294)||(46331107-46331157)
chr1 (229-314)||(46937568-46937653)
chr1 (236-296)||(1880078-1880137)
chr1 (260-292)||(26161605-26161637)
chr1 (230-290)||(51203656-51203715)
[»] chr6 (12 HSPs)
chr6 (216-292)||(2732921-2732997)
chr6 (218-293)||(2457203-2457278)
chr6 (231-293)||(1912505-1912567)
chr6 (217-287)||(31322632-31322702)
chr6 (256-293)||(33735434-33735471)
chr6 (264-311)||(18270596-18270643)
chr6 (229-291)||(264553-264615)
chr6 (225-295)||(2458287-2458357)
chr6 (257-291)||(5730194-5730228)
chr6 (229-294)||(3736990-3737055)
chr6 (230-294)||(26494407-26494471)
chr6 (258-294)||(29961267-29961303)
[»] chr7 (11 HSPs)
chr7 (218-294)||(2219523-2219599)
chr7 (227-300)||(7245941-7246014)
chr7 (256-291)||(32888961-32888996)
chr7 (231-292)||(1110408-1110469)
chr7 (263-292)||(5260422-5260451)
chr7 (217-290)||(6894313-6894386)
chr7 (242-295)||(21451521-21451574)
chr7 (258-291)||(30885321-30885354)
chr7 (225-261)||(7982371-7982407)
chr7 (230-290)||(23747322-23747382)
chr7 (230-294)||(32231761-32231825)
[»] chr4 (17 HSPs)
chr4 (223-290)||(27722414-27722481)
chr4 (221-292)||(1202394-1202464)
chr4 (230-284)||(9318705-9318759)
chr4 (264-325)||(18968308-18968367)
chr4 (216-292)||(2562467-2562543)
chr4 (224-291)||(13298522-13298589)
chr4 (256-295)||(34581604-34581643)
chr4 (264-294)||(19237629-19237659)
chr4 (225-295)||(27121489-27121559)
chr4 (229-299)||(30617262-30617331)
chr4 (258-291)||(207498-207531)
chr4 (230-291)||(415144-415205)
chr4 (265-309)||(46891314-46891356)
chr4 (246-290)||(1045848-1045892)
chr4 (263-295)||(26275537-26275569)
chr4 (241-289)||(31675044-31675092)
chr4 (217-257)||(39064895-39064935)
[»] chr5 (10 HSPs)
chr5 (217-295)||(11257714-11257792)
chr5 (264-304)||(27725540-27725580)
chr5 (231-306)||(41014989-41015064)
chr5 (252-290)||(29466203-29466240)
chr5 (225-299)||(39258556-39258630)
chr5 (258-295)||(631488-631525)
chr5 (259-295)||(9446300-9446336)
chr5 (250-306)||(17755219-17755275)
chr5 (229-289)||(20981268-20981328)
chr5 (264-296)||(41399566-41399598)
[»] chr3 (10 HSPs)
chr3 (246-296)||(27016920-27016970)
chr3 (230-291)||(162902-162963)
chr3 (264-312)||(21754271-21754319)
chr3 (258-293)||(14794293-14794328)
chr3 (259-292)||(53855744-53855777)
chr3 (245-314)||(54842174-54842243)
chr3 (258-314)||(2990960-2991016)
chr3 (216-276)||(16169188-16169248)
chr3 (259-291)||(38884077-38884109)
chr3 (233-277)||(48198079-48198123)
[»] chr8 (14 HSPs)
chr8 (250-305)||(10987788-10987843)
chr8 (252-299)||(13869837-13869884)
chr8 (224-295)||(27483044-27483115)
chr8 (224-283)||(34297884-34297943)
chr8 (245-294)||(12361983-12362032)
chr8 (219-299)||(13851001-13851079)
chr8 (230-294)||(8282847-8282911)
chr8 (259-295)||(33120557-33120593)
chr8 (263-306)||(18899974-18900017)
chr8 (224-294)||(44806251-44806321)
chr8 (230-295)||(1310129-1310194)
chr8 (259-292)||(4050471-4050504)
chr8 (259-292)||(45371098-45371131)
chr8 (258-314)||(9112445-9112501)
[»] chr2 (7 HSPs)
chr2 (232-291)||(41631885-41631944)
chr2 (224-301)||(29378502-29378579)
chr2 (262-317)||(10030155-10030210)
chr2 (262-317)||(10052068-10052123)
chr2 (224-295)||(24011834-24011905)
chr2 (224-291)||(28044715-28044782)
chr2 (225-291)||(29415748-29415814)


Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 52517355 - 52516945
Alignment:
Q  1 agcaaattgtagttgcaattgtttggactgtctgaaataggatgtgaggttatgaaatcttaaaagttctatccatttccaccccatatctatagttttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52517355 agcaaattgtagttgcaattgtttggactgtctgaaataggatgtgaggttatgaaatcttaaaagttctatccatttccaccccatatctatagttttt 52517256  T
Q  101 aacctgtcgggatattggggggtgaactattctaaatttctattgaagttaattaataaatatagcttacccctaccctactgttgttaattagtggcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52517255 aacctgtcgggatattggggggtgaactattctaaatttctattgaagttaattaataaatatagcttacccctaccctactgttgttaattagtggcta 52517156  T
Q  201 catcggcactacaatactatagagtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggcaatat 300  Q
    | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52517155 cgtcggcactacaacactatagagtagtggaatttgaactaattgctattattttgtgatatgttatttagtacaaaatattgtcaaatagcggcaatat 52517056  T
Q  301 agcactattgcatatagtaatttgattaacctgctatttttcttgatacacgattgataaaattgacttacccaccattttgattctcaaataatgaaat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52517055 agcactattgcatatagtaatttgattaacctgctatttttcttgatacacgattgataaaattgacttacccaccattttgattctcaaataatgaaat 52516956  T
Q  401 ggaaacctagt 411  Q
    |||||||||||    
T  52516955 ggaaacctagt 52516945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 310
Target Start/End: Original strand, 30882449 - 30882533
Alignment:
Q  225 tagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggcaatatagcactattg 310  Q
    ||||||||||||||| |||  ||||| ||||| ||||||||||| ||||||||||   |||||||||||||||||||||| |||||    
T  30882449 tagtggaatttgaacaaatcactattgttttgcgatatgctatt-agtacaaaatgacgtcaaatagcggcaatatagcattattg 30882533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 295
Target Start/End: Original strand, 7347692 - 7347757
Alignment:
Q  230 gaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggc 295  Q
    |||||||||| |||||||||| |||||  |||  ||||||||||||||||||||| ||||||||||    
T  7347692 gaatttgaacaaattgctattgttttgcaatacactatttagtacaaaatattgtgaaatagcggc 7347757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 17473138 - 17473199
Alignment:
Q  231 aatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagc 292  Q
    ||||| ||| || ||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  17473138 aatttaaacaaaatgctattgttttgcaatatgctatttagtacaaaatattgtcaaatagc 17473199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 37143361 - 37143292
Alignment:
Q  225 tagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcgg 294  Q
    ||||||| ||||||| |||| ||||||||  ||||||  |||||||||||||||||||| ||||||||||    
T  37143361 tagtggactttgaacaaattactattattgcgtgatacactatttagtacaaaatattgccaaatagcgg 37143292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 312
Target Start/End: Complemental strand, 26238482 - 26238438
Alignment:
Q  266 atttagtacaaaatattgtcaaatagcggcaatatagcactattgca 312  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||    
T  26238482 atttagtacaaaatattgccaaatagcggc--tatagcactattgca 26238438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 6026033 - 6025971
Alignment:
Q  229 ggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatag 291  Q
    ||||||||||| ||| | |||| ||  | |||||||||||||||||||||| |||||||||||    
T  6026033 ggaatttgaacaaatagttattgttccgcgatatgctatttagtacaaaatgttgtcaaatag 6025971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 294
Target Start/End: Complemental strand, 25634596 - 25634566
Alignment:
Q  264 ctatttagtacaaaatattgtcaaatagcgg 294  Q
    |||||||||||||||||||||||||||||||    
T  25634596 ctatttagtacaaaatattgtcaaatagcgg 25634566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 46331157 - 46331107
Alignment:
Q  244 tgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcgg 294  Q
    ||||||| |||| |||||||||||| ||||||||||  |||||||||||||    
T  46331157 tgctattgttttatgatatgctattaagtacaaaatggtgtcaaatagcgg 46331107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 314
Target Start/End: Original strand, 46937568 - 46937653
Alignment:
Q  229 ggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggcaatatagcactattgcata 314  Q
    ||||||||||| || ||||||| ||  | |||  |||||||||||||||||||||| |||||| |||  |||| |||| |||||||    
T  46937568 ggaatttgaacaaagtgctattgttccgcgatgcgctatttagtacaaaatattgtgaaatagtggcgctataacactgttgcata 46937653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 296
Target Start/End: Complemental strand, 1880137 - 1880078
Alignment:
Q  236 gaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggca 296  Q
    |||| |||||||||| || |||||||  ||||| |||||||||| ||||||||||||||||    
T  1880137 gaacaaattgctattgttatgtgatactctatt-agtacaaaatgttgtcaaatagcggca 1880078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 26161637 - 26161605
Alignment:
Q  260 tatgctatttagtacaaaatattgtcaaatagc 292  Q
    |||||||||||||||||| ||||||||||||||    
T  26161637 tatgctatttagtacaaagtattgtcaaatagc 26161605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 51203656 - 51203715
Alignment:
Q  230 gaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaata 290  Q
    ||||||||||||||||||| | ||||||  |||| ||||||| ||||| ||||||||||||    
T  51203656 gaatttgaactaattgctaatgttttgt-ctatgttatttagcacaaagtattgtcaaata 51203715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 216 - 292
Target Start/End: Original strand, 2732921 - 2732997
Alignment:
Q  216 actatagagtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagc 292  Q
    ||||||| |||||| ||||||||| ||| |||||| ||||| |||||||||||||||||||||| ||||||||||||    
T  2732921 actatagcgtagtgaaatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaatagc 2732997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 293
Target Start/End: Original strand, 2457203 - 2457278
Alignment:
Q  218 tatagagtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcg 293  Q
    ||||| |||||||||||||||  ||   ||||| |||||||||||||||||||||||||||| |||||||| ||||    
T  2457203 tatagtgtagtggaatttgaaaaaacgactattgttttgtgatatgctatttagtacaaaatgttgtcaaacagcg 2457278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 1912567 - 1912505
Alignment:
Q  231 aatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcg 293  Q
    ||||||||| ||| |||||| || || ||||| |||||||||||||| |||||||||||||||    
T  1912567 aatttgaacaaatcgctattgttctgcgatatactatttagtacaaattattgtcaaatagcg 1912505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 31322632 - 31322702
Alignment:
Q  217 ctatagagtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaa 287  Q
    |||||| |||||||||||||||| ||||| ||||||| |||||||  ||||||  |||||||| |||||||    
T  31322632 ctatagcgtagtggaatttgaacaaattgttattattctgtgatacactatttcttacaaaatgttgtcaa 31322702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 33735471 - 33735434
Alignment:
Q  256 gtgatatgctatttagtacaaaatattgtcaaatagcg 293  Q
    |||||||||||||||||||||||| |||||||||||||    
T  33735471 gtgatatgctatttagtacaaaatgttgtcaaatagcg 33735434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 18270643 - 18270596
Alignment:
Q  264 ctatttagtacaaaatattgtcaaatagcggcaatatagcactattgc 311  Q
    ||||||| ||||||||||||| ||||||||||| ||||||||| ||||    
T  18270643 ctatttaatacaaaatattgtgaaatagcggcactatagcactgttgc 18270596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 291
Target Start/End: Original strand, 264553 - 264615
Alignment:
Q  229 ggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatag 291  Q
    ||||||||||| ||||| |||| || |||| || ||||||||||||||| | |||||||||||    
T  264553 ggaatttgaacaaattgttattgttctgtggtaggctatttagtacaaagtgttgtcaaatag 264615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 2458287 - 2458357
Alignment:
Q  225 tagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggc 295  Q
    |||||||| |||||| |||| ||||| |   ||||||||||||| |||| |||||||||||| ||||||||    
T  2458287 tagtggaaattgaacaaattactattgtcccgtgatatgctattcagtataaaatattgtcagatagcggc 2458357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 5730228 - 5730194
Alignment:
Q  257 tgatatgctatttagtacaaaatattgtcaaatag 291  Q
    ||||||||||||||||||||||| |||||||||||    
T  5730228 tgatatgctatttagtacaaaatcttgtcaaatag 5730194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 3736990 - 3737055
Alignment:
Q  229 ggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcgg 294  Q
    ||||||||||| ||||| |||| || || ||||||||||| |||||||| |||| ||| |||||||    
T  3736990 ggaatttgaacaaattgttattgttctgcgatatgctattcagtacaaactattatcatatagcgg 3737055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 26494407 - 26494471
Alignment:
Q  230 gaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcgg 294  Q
    ||||||||||||||||||||| || ||  ||  ||||||||||||||| | ||||||||| ||||    
T  26494407 gaatttgaactaattgctattgttctgcaattcgctatttagtacaaactgttgtcaaattgcgg 26494471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 29961303 - 29961267
Alignment:
Q  258 gatatgctatttagtacaaaatattgtcaaatagcgg 294  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  29961303 gatatgctattcagtacaatatattgtcaaatagcgg 29961267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 2219599 - 2219523
Alignment:
Q  218 tatagagtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcgg 294  Q
    ||||| ||||| ||||||||||  || | |||| || | ||||||||||||||||||||||||||||||||||||||    
T  2219599 tatagtgtagtagaatttgaacatatcgttattgttctctgatatgctatttagtacaaaatattgtcaaatagcgg 2219523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 7246014 - 7245941
Alignment:
Q  227 gtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggcaatat 300  Q
    ||||||||| ||| ||| |||||| ||||| |||| ||||||||||||||| | ||||||||||||||| ||||    
T  7246014 gtggaatttaaacaaatcgctattcttttgcgatacgctatttagtacaaagtgttgtcaaatagcggctatat 7245941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 291
Target Start/End: Original strand, 32888961 - 32888996
Alignment:
Q  256 gtgatatgctatttagtacaaaatattgtcaaatag 291  Q
    |||||||||||||||||||||| |||||||||||||    
T  32888961 gtgatatgctatttagtacaaagtattgtcaaatag 32888996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 1110469 - 1110408
Alignment:
Q  231 aatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagc 292  Q
    ||||||||| |||||||||| ||| | ||||||||||||||| | || | ||||||||||||    
T  1110469 aatttgaacaaattgctattgtttcgggatatgctatttagttctaagtgttgtcaaatagc 1110408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 292
Target Start/End: Original strand, 5260422 - 5260451
Alignment:
Q  263 gctatttagtacaaaatattgtcaaatagc 292  Q
    ||||||||||||||||||||||||||||||    
T  5260422 gctatttagtacaaaatattgtcaaatagc 5260451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 6894386 - 6894313
Alignment:
Q  217 ctatagagtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaata 290  Q
    |||||| |||||||||||||||| |||||||||| |||    |||  ||||| |||||||||| ||||||||||    
T  6894386 ctatagcgtagtggaatttgaacaaattgctattgtttaacaatacactattaagtacaaaatgttgtcaaata 6894313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 21451574 - 21451521
Alignment:
Q  242 attgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggc 295  Q
    ||||||||| || || |||| || |||||||||||||| |||||||||||||||    
T  21451574 attgctattgttctgcgatacgcaatttagtacaaaatcttgtcaaatagcggc 21451521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 30885354 - 30885321
Alignment:
Q  258 gatatgctatttagtacaaaatattgtcaaatag 291  Q
    ||||||||||||||||||||| ||||||||||||    
T  30885354 gatatgctatttagtacaaaacattgtcaaatag 30885321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 7982407 - 7982371
Alignment:
Q  225 tagtggaatttgaactaattgctattattttgtgata 261  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  7982407 tagtggaatttgaacaaattgctattgttttgtgata 7982371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 23747322 - 23747382
Alignment:
Q  230 gaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaata 290  Q
    |||||||||| ||| |||||| || |||||||||||| |||||||||| | ||||| ||||    
T  23747322 gaatttgaacaaatagctattgttctgtgatatgctagttagtacaaactgttgtcgaata 23747382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 32231761 - 32231825
Alignment:
Q  230 gaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcgg 294  Q
    |||||||||| |||  ||| | || ||||||||| ||||||| |||||||||||| |||||||||    
T  32231761 gaatttgaacaaatctctagtgttctgtgatatgttatttagcacaaaatattgtgaaatagcgg 32231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 290
Target Start/End: Complemental strand, 27722481 - 27722414
Alignment:
Q  223 agtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaata 290  Q
    |||||| ||||||||||||||||||||| ||    ||||||||||| |||||||||||||||||||||    
T  27722481 agtagtagaatttgaactaattgctattgttccacgatatgctattaagtacaaaatattgtcaaata 27722414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 292
Target Start/End: Complemental strand, 1202464 - 1202394
Alignment:
Q  221 agagtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagc 292  Q
    |||||||||||| |||||  |||| | || |||||| |||||||||||||||| ||||||||||||||||||    
T  1202464 agagtagtggaaattgaagaaattaccat-attttgcgatatgctatttagtataaaatattgtcaaatagc 1202394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 9318705 - 9318759
Alignment:
Q  230 gaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgt 284  Q
    |||||||||| ||||  |||| ||| |||||||||||||||||||||||||||||    
T  9318705 gaatttgaacaaattcatattgtttagtgatatgctatttagtacaaaatattgt 9318759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 325
Target Start/End: Original strand, 18968308 - 18968367
Alignment:
Q  264 ctatttagtacaaaatattgtcaaatagcggcaatatagcactattgcatatagtaatttga 325  Q
    |||||||||||||||| |||||||||||||||  |||| ||||||||||||  |||||||||    
T  18968308 ctatttagtacaaaatgttgtcaaatagcggc--tataacactattgcatagcgtaatttga 18968367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 292
Target Start/End: Original strand, 2562467 - 2562543
Alignment:
Q  216 actatagagtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagc 292  Q
    ||||||| | || ||||||||||| ||| ||||| ||||  ||||| ||| |||||||||||| |||||||||||||    
T  2562467 actatagtgcagcggaatttgaacaaatcgctataatttcctgatacgctgtttagtacaaaacattgtcaaatagc 2562543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 13298522 - 13298589
Alignment:
Q  224 gtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatag 291  Q
    |||| ||||||||||| |||  ||||| || ||||||||||||||||||||||| |  ||||||||||    
T  13298522 gtagcggaatttgaacaaatcactattgttctgtgatatgctatttagtacaaagtgctgtcaaatag 13298589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 34581604 - 34581643
Alignment:
Q  256 gtgatatgctatttagtacaaaatattgtcaaatagcggc 295  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  34581604 gtgatacgctatttagtacaaaatgttgtcaaatagcggc 34581643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 294
Target Start/End: Complemental strand, 19237659 - 19237629
Alignment:
Q  264 ctatttagtacaaaatattgtcaaatagcgg 294  Q
    |||||||||||||||||||||||||||||||    
T  19237659 ctatttagtacaaaatattgtcaaatagcgg 19237629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 27121489 - 27121559
Alignment:
Q  225 tagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggc 295  Q
    |||||||| |||||| |||| ||||| |   ||||||||||||| |||| |||||||||||| ||||||||    
T  27121489 tagtggaaattgaacaaattactattgtcccgtgatatgctattcagtataaaatattgtcagatagcggc 27121559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 299
Target Start/End: Complemental strand, 30617331 - 30617262
Alignment:
Q  229 ggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggcaata 299  Q
    ||||||||||| ||| |||| | || ||||||| |||||| ||||||||||||||| |||||| |||||||    
T  30617331 ggaatttgaacaaatcgctagtgttctgtgatacgctatt-agtacaaaatattgtgaaatagtggcaata 30617262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 207498 - 207531
Alignment:
Q  258 gatatgctatttagtacaaaatattgtcaaatag 291  Q
    |||||||||||||||||||| |||||||||||||    
T  207498 gatatgctatttagtacaaagtattgtcaaatag 207531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 415144 - 415205
Alignment:
Q  230 gaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatag 291  Q
    |||||||||| | | |||||| ||| ||||| |||||||||||||||||| |||| ||||||    
T  415144 gaatttgaacaagtcgctattgtttcgtgatttgctatttagtacaaaatgttgtgaaatag 415205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 46891356 - 46891314
Alignment:
Q  265 tatttagtacaaaatattgtcaaatagcggcaatatagcactatt 309  Q
    |||||||||||||||||||| ||||||||||  ||||||||||||    
T  46891356 tatttagtacaaaatattgtgaaatagcggc--tatagcactatt 46891314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 1045848 - 1045892
Alignment:
Q  246 ctattattttgtgatatgctatttagtacaaaatattgtcaaata 290  Q
    ||||| |||||||||| || ||||| |||||||||||||||||||    
T  1045848 ctattgttttgtgatacgcgatttaatacaaaatattgtcaaata 1045892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 26275569 - 26275537
Alignment:
Q  263 gctatttagtacaaaatattgtcaaatagcggc 295  Q
    |||||||||||||||||||||| ||||||||||    
T  26275569 gctatttagtacaaaatattgtgaaatagcggc 26275537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 31675092 - 31675044
Alignment:
Q  241 aattgctattattttgtgatatgctatttagtacaaaatattgtcaaat 289  Q
    |||||||||| | |||||||| | ||||||||||||||| |||||||||    
T  31675092 aattgctattgtcttgtgatacgttatttagtacaaaatgttgtcaaat 31675044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 39064935 - 39064895
Alignment:
Q  217 ctatagagtagtggaatttgaactaattgctattattttgt 257  Q
    |||||| |||||||||||||||| |||||||||| ||||||    
T  39064935 ctatagcgtagtggaatttgaacaaattgctattgttttgt 39064895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 11257714 - 11257792
Alignment:
Q  217 ctatagagtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggc 295  Q
    |||||| |||| ||||| ||||| ||| |||||| || |  |||||||||||||||||||||| |||||||||||||||    
T  11257714 ctatagtgtagcggaatatgaacaaatcgctattgttatacgatatgctatttagtacaaaatgttgtcaaatagcggc 11257792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 27725540 - 27725580
Alignment:
Q  264 ctatttagtacaaaatattgtcaaatagcggcaatatagca 304  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  27725540 ctatttagtacaaaatattgtcaaatagcggcactatagca 27725580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 41015064 - 41014989
Alignment:
Q  231 aatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggcaatatagcact 306  Q
    ||||||||| || ||||||| ||  |||||||||||||||||||||| | |||||| ||||| || ||||||||||    
T  41015064 aatttgaacaaactgctattgttccgtgatatgctatttagtacaaagtgttgtcatatagctgcgatatagcact 41014989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 290
Target Start/End: Original strand, 29466203 - 29466240
Alignment:
Q  252 ttttgtgatatgctatttagtacaaaatattgtcaaata 290  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  29466203 ttttgtgatatgctatttagtacaaaata-tgtcaaata 29466240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 299
Target Start/End: Complemental strand, 39258630 - 39258556
Alignment:
Q  225 tagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggcaata 299  Q
    ||||||||||||||| ||||| |||| || || ||||  ||||||||||||||   |||||||||| ||||||||    
T  39258630 tagtggaatttgaaccaattgttattgttctgcgatacactatttagtacaaaggtttgtcaaataacggcaata 39258556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 295
Target Start/End: Complemental strand, 631525 - 631488
Alignment:
Q  258 gatatgctatttagtacaaaatattgtcaaatagcggc 295  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  631525 gatacgctatttagtacaaaatattgtcatatagcggc 631488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 9446300 - 9446336
Alignment:
Q  259 atatgctatttagtacaaaatattgtcaaatagcggc 295  Q
    |||||||||||||||||||||||| | ||||||||||    
T  9446300 atatgctatttagtacaaaatattatgaaatagcggc 9446336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 17755275 - 17755219
Alignment:
Q  250 tattttgtgatatgctatttagtacaaaatattgtcaaatagcggcaatatagcact 306  Q
    |||| ||| ||| ||||||||||||||| | ||||||||||| |||| |||||||||    
T  17755275 tattatgtaatacgctatttagtacaaagtgttgtcaaatagaggcactatagcact 17755219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 20981268 - 20981328
Alignment:
Q  229 ggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaat 289  Q
    |||||||||||||||  ||||| || ||  ||| ||||||||||| |||||||||||||||    
T  20981268 ggaatttgaactaatcactattgttctgcaatacgctatttagtataaaatattgtcaaat 20981328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 41399598 - 41399566
Alignment:
Q  264 ctatttagtacaaaatattgtcaaatagcggca 296  Q
    |||||||||||||||| ||||||||||||||||    
T  41399598 ctatttagtacaaaatgttgtcaaatagcggca 41399566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 27016970 - 27016920
Alignment:
Q  246 ctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggca 296  Q
    ||||||||||||||||| |||||||||||||||| ||||||||| ||||||    
T  27016970 ctattattttgtgatatactatttagtacaaaatgttgtcaaattgcggca 27016920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 162902 - 162963
Alignment:
Q  230 gaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatag 291  Q
    |||||||||| ||||| ||||||| || |||  |||||||||||||||||||||| ||||||    
T  162902 gaatttgaacaaattgttattattctgcgatgcgctatttagtacaaaatattgtgaaatag 162963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 21754271 - 21754319
Alignment:
Q  264 ctatttagtacaaaatattgtcaaatagcggcaatatagcactattgca 312  Q
    |||||||||||||| | |||||||||||||||  |||||||||||||||    
T  21754271 ctatttagtacaaattgttgtcaaatagcggcgctatagcactattgca 21754319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 293
Target Start/End: Complemental strand, 14794328 - 14794293
Alignment:
Q  258 gatatgctatttagtacaaaatattgtcaaatagcg 293  Q
    |||| |||||||||||||||||||||||||||||||    
T  14794328 gatacgctatttagtacaaaatattgtcaaatagcg 14794293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 53855777 - 53855744
Alignment:
Q  259 atatgctatttagtacaaaatattgtcaaatagc 292  Q
    ||||||||||||||||||||| ||||||||||||    
T  53855777 atatgctatttagtacaaaatgttgtcaaatagc 53855744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 314
Target Start/End: Complemental strand, 54842243 - 54842174
Alignment:
Q  245 gctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggcaatatagcactattgcata 314  Q
    |||||| || ||||||| ||||||||||| ||||| |||||||||||| |   |||||| ||||||||||    
T  54842243 gctattgttctgtgatacgctatttagtataaaatgttgtcaaatagctgtgctatagccctattgcata 54842174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 2991016 - 2990960
Alignment:
Q  258 gatatgctatttagtacaaaatattgtcaaatagcggcaatatagcactattgcata 314  Q
    |||| ||||||||||||||||| ||||||||||| |||  |||| |||| |||||||    
T  2991016 gatacgctatttagtacaaaatgttgtcaaatagtggccctatatcactgttgcata 2990960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 16169248 - 16169188
Alignment:
Q  216 actatagagtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaa 276  Q
    ||||||||||||  | |||||||||||| |||||| || || ||||||||||| |||||||    
T  16169248 actatagagtagcagtatttgaactaatcgctattgttctgcgatatgctattgagtacaa 16169188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 291
Target Start/End: Complemental strand, 38884109 - 38884077
Alignment:
Q  259 atatgctatttagtacaaaatattgtcaaatag 291  Q
    ||||||||||| |||||||||||||||||||||    
T  38884109 atatgctatttggtacaaaatattgtcaaatag 38884077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 48198123 - 48198079
Alignment:
Q  233 tttgaactaattgctattattttgtgatatgctatttagtacaaa 277  Q
    ||||||||||| |||||| || ||||||||| |||||||||||||    
T  48198123 tttgaactaatcgctattgttctgtgatatgttatttagtacaaa 48198079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 10987788 - 10987843
Alignment:
Q  250 tattttgtgatatgctatttagtacaaaatattgtcaaatagcggcaatatagcac 305  Q
    |||| ||||||||||||||||||||||| | |||||||||||||||| ||| ||||    
T  10987788 tattctgtgatatgctatttagtacaaagttttgtcaaatagcggcactattgcac 10987843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 299
Target Start/End: Complemental strand, 13869884 - 13869837
Alignment:
Q  252 ttttgtgatatgctatttagtacaaaatattgtcaaatagcggcaata 299  Q
    |||||||||||||||||||||||||||| |||||||| || |||||||    
T  13869884 ttttgtgatatgctatttagtacaaaatgttgtcaaacagtggcaata 13869837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 295
Target Start/End: Original strand, 27483044 - 27483115
Alignment:
Q  224 gtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggc 295  Q
    |||| ||||||||||| ||  ||||||||| || |||| |||||  ||||||||||||||||||||||||||    
T  27483044 gtagaggaatttgaacaaaccgctattattctgagatacgctatccagtacaaaatattgtcaaatagcggc 27483115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 283
Target Start/End: Complemental strand, 34297943 - 34297884
Alignment:
Q  224 gtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattg 283  Q
    |||| ||||||||||  |||||||||| |||||| ||| |||||||||||||||||||||    
T  34297943 gtagaggaatttgaatgaattgctattgttttgtaatacgctatttagtacaaaatattg 34297884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 12361983 - 12362032
Alignment:
Q  245 gctattattttgtgatatgctatttagtacaaaatattgtcaaatagcgg 294  Q
    ||||||||| |||||||  ||||||||||||||||||||| |||||||||    
T  12361983 gctattattgtgtgatacactatttagtacaaaatattgtgaaatagcgg 12362032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 13851079 - 13851001
Alignment:
Q  219 atagagtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggcaata 299  Q
    |||| |||| ||||||||| | | ||||||||  |||||||||| |||||||||||||||| || |||||||| |||||||    
T  13851079 atagcgtagaggaatttgagcaagttgctatt--tttgtgatatactatttagtacaaaatgttatcaaatagtggcaata 13851001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 8282911 - 8282847
Alignment:
Q  230 gaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcgg 294  Q
    |||||||||| ||| |||||| | ||||||||||| ||||| |||||||| || |||||||||||    
T  8282911 gaatttgaacaaatagctattgtcttgtgatatgcgatttattacaaaatgttctcaaatagcgg 8282847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 33120593 - 33120557
Alignment:
Q  259 atatgctatttagtacaaaatattgtcaaatagcggc 295  Q
    ||||||||||||||||||||| |||||||||||||||    
T  33120593 atatgctatttagtacaaaatgttgtcaaatagcggc 33120557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 18900017 - 18899974
Alignment:
Q  263 gctatttagtacaaaatattgtcaaatagcggcaatatagcact 306  Q
    |||||||| |||||||| ||||||||||| ||||||||||||||    
T  18900017 gctatttattacaaaatgttgtcaaatagaggcaatatagcact 18899974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 294
Target Start/End: Original strand, 44806251 - 44806321
Alignment:
Q  224 gtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcgg 294  Q
    ||||| |||||||||| || ||||| |||||   |||| ||||||||||||||| | ||||||||||||||    
T  44806251 gtagtagaatttgaacaaactgctactatttcacgataggctatttagtacaaagtgttgtcaaatagcgg 44806321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 295
Target Start/End: Original strand, 1310129 - 1310194
Alignment:
Q  230 gaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggc 295  Q
    |||||||||| |||||||||| ||   |||||  ||||||||||||| ||||||| ||||||||||    
T  1310129 gaatttgaacaaattgctattgttccttgatacactatttagtacaatatattgtgaaatagcggc 1310194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 4050471 - 4050504
Alignment:
Q  259 atatgctatttagtacaaaatattgtcaaatagc 292  Q
    |||||||||||||| |||||||||||||||||||    
T  4050471 atatgctatttagtccaaaatattgtcaaatagc 4050504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 45371131 - 45371098
Alignment:
Q  259 atatgctatttagtacaaaatattgtcaaatagc 292  Q
    ||||||||||||||||||||| ||||||||||||    
T  45371131 atatgctatttagtacaaaatgttgtcaaatagc 45371098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 9112445 - 9112501
Alignment:
Q  258 gatatgctatttagtacaaaatattgtcaaatagcggcaatatagcactattgcata 314  Q
    |||||||||||||||||| |||||||| |||||| |||  || |||| |||||||||    
T  9112445 gatatgctatttagtacagaatattgtgaaatagtggcgctacagcaatattgcata 9112501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 41631944 - 41631885
Alignment:
Q  232 atttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatag 291  Q
    |||||||| |||||||||| ||||||||||||||||||||||| || | ||||| |||||    
T  41631944 atttgaacaaattgctattgttttgtgatatgctatttagtacgaagtgttgtcgaatag 41631885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 301
Target Start/End: Original strand, 29378502 - 29378579
Alignment:
Q  224 gtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggcaatata 301  Q
    |||| ||||||||||| ||||| |||| || || |||| ||||||| ||||||| ||||||| ||||||||| |||||    
T  29378502 gtagcggaatttgaacaaattgatattgttctgcgatacgctattttgtacaaagtattgtctaatagcggctatata 29378579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 10030210 - 10030155
Alignment:
Q  262 tgctatttagtacaaaatattgtcaaatagcggcaatatagcactattgcatatag 317  Q
    ||||||||||||  |||| || ||||||||||||  ||||||||||||||||||||    
T  10030210 tgctatttagtattaaatgttttcaaatagcggcgctatagcactattgcatatag 10030155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 10052123 - 10052068
Alignment:
Q  262 tgctatttagtacaaaatattgtcaaatagcggcaatatagcactattgcatatag 317  Q
    ||||||||||||  |||| || ||||||||||||  ||||||||||||||||||||    
T  10052123 tgctatttagtattaaatgttttcaaatagcggcgctatagcactattgcatatag 10052068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 295
Target Start/End: Complemental strand, 24011905 - 24011834
Alignment:
Q  224 gtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggc 295  Q
    |||| ||||||||||| || ||| ||| |||||| ||| ||||||| ||| |||||||||| ||||||||||    
T  24011905 gtagcggaatttgaacaaactgcaattgttttgtaataagctattttgtataaaatattgtgaaatagcggc 24011834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 28044782 - 28044715
Alignment:
Q  224 gtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatag 291  Q
    |||| ||||||||||  || | ||||| ||||||||||||| |||||||||||| | |||||||||||    
T  28044782 gtagcggaatttgaataaactactattgttttgtgatatgcgatttagtacaaagtgttgtcaaatag 28044715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 29415814 - 29415748
Alignment:
Q  225 tagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatag 291  Q
    ||||||| ||| ||| |||||||||| || ||||||||||  || |||||||||| |||||||||||    
T  29415814 tagtggagtttaaacaaattgctattgttctgtgatatgccgttcagtacaaaatgttgtcaaatag 29415748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University