View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_high_18 (Length: 378)
Name: NF8349_high_18
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 22978276 - 22977914
Alignment:
| Q |
1 |
gaaatgaaagagaggagaagtgcgcaacattgccaagttaggttgcggcagtaggagataagatgttgtatgttgagagcattagttttagatattttct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
22978276 |
gaaatgaaagagaggagaagtgcgcaacattgccaagttaggttgcgacagtaggagataagatgttgtatgtagagaacattagttttagatattttct |
22978177 |
T |
|
| Q |
101 |
caatccacccccctaaaacacaaggggtttacctgaagtgtacttccggtagtgcattttatctgaaaaaacactgccggaagtgtgtttccggcagtat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
22978176 |
caatccacccccctaaaacacaaggggtttacctgaagtgtacttccggtagtgcattttatctgaaaaaacactaccggaagtgtgtttctggcagtat |
22978077 |
T |
|
| Q |
201 |
attttgactaatttgagcatatag-ggggaggattgagaaactgtcttagttttaaggtttggcatagtagtattttttaggatttagcatatgggcttt |
299 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22978076 |
attttgactaatttgagcatataggggggaggattgagaaactgtcttagttttaaggtttggcatagtagaattttttaggatttagcatatgggcttt |
22977977 |
T |
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| Q |
300 |
ttaaaaagtccactgatgggcctaagtctcattcatgaagaattgtttctctctttgggtctt |
362 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22977976 |
ttaaaaagtccaatgatgggcctaagtctcattcatgaagaattgtttctctctttgggtctt |
22977914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 1124353 - 1124709
Alignment:
| Q |
1 |
gaaatgaaagagaggagaagtgcgcaacattgccaagttaggttgcggcagtaggagataagatgttgtatgttgagagcattagttttagatattttct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1124353 |
gaaatgaaagagaggagaagtgcgcaacattgccaagttaggttgcggcagtaggagataagatgttgtatgtagagagcattagttttagatattttct |
1124452 |
T |
|
| Q |
101 |
caatccacccccctaaaacacaaggggtttacctgaagtgtacttccggtagtgcattttatctgaaaaaacactgccggaagtgtgtttccggcagtat |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1124453 |
caatcc-----cctaaaacacaaggggtttacctgaagtgtacttccggtagtgcattttatctgaaaaaacactaccggaagtgtgtttccggcagtat |
1124547 |
T |
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| Q |
201 |
attttgactaatttgagcatatagggggaggattgagaaactgtcttagttttaaggtttggcatagtagtattttttaggatttagcatatgggctttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1124548 |
attttgactaatttgagcatatagggggaggattgagaaactgtcttagttttaaggtttggcatagtagaattttttaggatttagcatatgggctttt |
1124647 |
T |
|
| Q |
301 |
taaaaagtccactgatgggcctaagtctcattcatgaagaattgtttctctctttgggtctt |
362 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1124648 |
taaaaagtccaatgatgggcctaagtctcattcatgaagaattgtttctctctttgggtctt |
1124709 |
T |
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