View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_high_20 (Length: 362)
Name: NF8349_high_20
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 346
Target Start/End: Complemental strand, 51458225 - 51457895
Alignment:
| Q |
16 |
caatagttataaagtgctaacacagaattgatcaggaaatgcatcattcattattcaagtcctaaaaatactttgcagtttatgccactggtcataaaaa |
115 |
Q |
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| T |
51458225 |
caatagttataaagtgctaacaaagaattgatcaggaaatgcatcattcattattcaagtcctaaaaatactttgcagtttatgccacttgtcataaaaa |
51458126 |
T |
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| Q |
116 |
gaatacttttttgagtcattattaccaaaatcccaagagaaataacaaatcaaatgaataaattatctatgacagtgcaatgaacaaagaattatgacat |
215 |
Q |
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| T |
51458125 |
gaatacttttttgagtcattattaccaaaatcccaagagaaataacaaatcaaatggataaattatctatgacagtgcaatgaacaaagaattatgacat |
51458026 |
T |
|
| Q |
216 |
atacttgaagctgcacaacaatcagctcgtaagaaaataaacagataaatgaaatggcttacaaaacaaaaatgcacatgtcctacaaattatgcacttt |
315 |
Q |
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| T |
51458025 |
atacttgaagctgcacaacaatcagctcgtaagaaaataaacagataaatgaaatggcttccaaaacaaaaatgcacatgtcccacaaattatgcacttt |
51457926 |
T |
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| Q |
316 |
ttatcctatactcgattcataacaacaataa |
346 |
Q |
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| T |
51457925 |
ttatcctatactcgattcataacaacaataa |
51457895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 59 - 318
Target Start/End: Complemental strand, 43162497 - 43162247
Alignment:
| Q |
59 |
tcattcattattcaagtcctaaaaatactttgcagtttatgccactggtcataaaaagaatacttttttgagtcatta-ttaccaaaatcccaagagaaa |
157 |
Q |
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| T |
43162497 |
tcattcgttattcatgtcgtaagaatactttgaagtttatgtcactagtcgtaaaaagaattctttttcgaatcattaattaccaaaacacca------- |
43162405 |
T |
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| Q |
158 |
taacaaatcaaatgaataaattatctatgacagtgcaatgaacaaagaattatgacatatacttgaagctgcacaacaatcagctcgtaagaaaataaac |
257 |
Q |
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|||||||||| | ||||||||||||||||||||||| ||||| ||||||||| | |||||||| || ||||||| ||||||| ||||||||| ||| |
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| T |
43162404 |
---caaatcaaattatgaaattatctatgacagtgcaatggacaaaaaattatgacttgtacttgaaactacacaacattcagctcctaagaaaatgaac |
43162308 |
T |
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| Q |
258 |
agataaatgaaatggcttacaaaacaaaaatgcacatgtcctacaaattatgcacttttta |
318 |
Q |
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||||||||| |||||||||||||||||||| |||||||||| |||||||| |||||||| |
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| T |
43162307 |
agataaatgcaatggcttacaaaacaaaaacacacatgtcctgtaaattatgtacttttta |
43162247 |
T |
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