View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_high_26 (Length: 325)
Name: NF8349_high_26
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_high_26 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: scaffold0049 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 64553 - 64220
Alignment:
| Q |
1 |
gaacctaaagcccatcgaagcacttggtttagacgatctgaaaggttgataggtgaagaatctttaaatcagta---------atcgtaggtcataaagt |
91 |
Q |
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| T |
64553 |
gaacctaaagcccatcgaagcacttggtttagacgatctgaaagattgataggtgcagaatctttaaatcagtagatagaccaatcataggtcataaagt |
64454 |
T |
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| Q |
92 |
ttgatttagtaaataactgaattgttaagatagccatagtttaaagattgacgtaaaataagaaaaccagcaaaagtagtaacctgtaaatcttgttcta |
191 |
Q |
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| T |
64453 |
ttgatctagtaaataactgaattgttaagatagccatagtttaaagattgacgtaaaataagaaaaccagcaaaagtagtaacctgtaaatcttgttcta |
64354 |
T |
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| Q |
192 |
gaccatcatcagatcttctcgacaatttgtcaatgtaacttgaaacccaactgggtttgatcctgcaactagattatgaatataagaatctctctttgat |
291 |
Q |
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| T |
64353 |
gaccatcatcagatcttctcgacaatttgtcaatgtaacttgaaacccaactgggtttgatcctacaactagattatgaatataagaatctctctttgat |
64254 |
T |
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| Q |
292 |
ggaaatttggatttaaatcttaattaatgtttct |
325 |
Q |
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| T |
64253 |
ggaaatttggatttaaatcttaattaatgtttct |
64220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 13823830 - 13823898
Alignment:
| Q |
1 |
gaacctaaagcccatcgaagcacttggtttagacgatctgaaaggttgataggtgaagaatctttaaat |
69 |
Q |
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| T |
13823830 |
gaacctaaagcccatcgaagcacttggtttagacgatcagaaagattgatgggtgcagaacctttaaat |
13823898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 24301318 - 24301371
Alignment:
| Q |
129 |
agtttaaagattgacgtaaaataagaaaaccagcaaaag-tagtaacctgtaaa |
181 |
Q |
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| T |
24301318 |
agtttgaagattgaagtaaaaaaagaaaaccagcaaaagctaggaacctgtaaa |
24301371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 43434184 - 43434252
Alignment:
| Q |
1 |
gaacctaaagcccatcgaagcacttggtttagacgatctgaaaggttgataggtgaagaatctttaaat |
69 |
Q |
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| T |
43434184 |
gaacctaaagcccaccgaagcacttggtttagccgatctgaaagattgataggtgcagaacctttaaat |
43434252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 210
Target Start/End: Complemental strand, 24787899 - 24787812
Alignment:
| Q |
125 |
ccatagtttaaagattgacgtaaaataa--gaaaaccagcaaaagtagtaacctgtaaatcttgttctagaccatcatcagatcttct |
210 |
Q |
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| T |
24787899 |
ccatagtttaaagattgagggaaaataaaagaaaaccagcaaagctaggaacctgtaaacactgttctggaccatcatctgatcttct |
24787812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 9481968 - 9481916
Alignment:
| Q |
1 |
gaacctaaagcccatcgaagcacttggtttagacgatctgaaaggttgatagg |
53 |
Q |
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||||||||||||||||||||||||||||| | |||||| ||||| |||||||| |
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| T |
9481968 |
gaacctaaagcccatcgaagcacttggttcaaacgatcggaaagattgatagg |
9481916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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