View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_high_28 (Length: 313)
Name: NF8349_high_28
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 296
Target Start/End: Original strand, 7329373 - 7329658
Alignment:
| Q |
12 |
attattctctaattaagataaaacacagttaaagtcctcactcttcactcgcttagttattttaatttgtgacgttgaacatggacgttaactgagtcaa |
111 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
7329373 |
attagtctctaattaagataaaacacagttaaagtcctcactcttcactcgcttagttattttaattcgtgacgttgaacatggacattaactgagtcaa |
7329472 |
T |
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| Q |
112 |
aatgatgtagctactaagaagtcaaattgtatgatgatgtacatagaagggaaggaaatgaaaggaaactgaacattcttcttcatcatttcacatg-nn |
210 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7329473 |
aatgacgtagctactaagaagtcaaattgtatgatgatgtgcatagaagggaaggaaatgaaaggaaactgaacattcttcttcatcatttcacaagttt |
7329572 |
T |
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| Q |
211 |
nnnnnnncctctactctcatcttcctctcttcattaacatattaatttttcatataacggaaaatattattgaaggatctaagaac |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7329573 |
tttttttcctctactctcatcttcctctcttcattaacatattaatttttcatataacggaaaatattattgaaggatctaagaac |
7329658 |
T |
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