View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_high_3 (Length: 593)
Name: NF8349_high_3
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 17 - 567
Target Start/End: Original strand, 32341022 - 32341572
Alignment:
| Q |
17 |
atattaaaagtgatggagaaccacttaagatgcctcggtcgatgaggattccaaccgaacaaggagctctttcgaggactttaatgtttactctttggat |
116 |
Q |
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| T |
32341022 |
atattaaaagtgatggagaaccacttaagatgcctcggtcgatgaggattccaaccgaacaaggagctctttcgaggactttaatgtttactctttggat |
32341121 |
T |
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| Q |
117 |
tgctccattgtttacctcaactgttccatctatttcccaccttttatgaaatggcatgattataatgttggctcttgtgtctagcgatattcgacaaaca |
216 |
Q |
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| T |
32341122 |
tgctccattgtttacctcaactgttccatctatttcccaccttttatgaaatggcatgatcataatgttggctcttctgtctagcgatattcgacaaaca |
32341221 |
T |
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| Q |
217 |
tcttcattgattgtgtcaaagtcagagattgatgtgaatgattgagcatatgcgaacccttcattgagctgtacatattgcttcaatgcattgtcgagtt |
316 |
Q |
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| T |
32341222 |
tcgtcattgattgtgtcaaagtcagagattgatgtgaatgattgagcatatgcgaacccttcattgagctgtacatattgcttcaatgcattgtcgagtt |
32341321 |
T |
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| Q |
317 |
cagttgaaccacatttggttaaccgaagcgtgtcgtgctcttggtgagcgacgagaataggccttgaccttccgagaagctctacaaggagaagtgctat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32341322 |
cagttgaaccacatttggttaaccgaagcgtgtcgtgctcttggtgagcgacaagaataggccttgaccttccgagaagctctacaaggagaagtgctat |
32341421 |
T |
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| Q |
417 |
aactgaaacattgctttctttgcttgcacatgatgcttctatgatgttgagcattgttgggatgttttcatctttgtaaatgcataccatgattcggagc |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32341422 |
aactgaaacattgctttctttgcttgcacatgatgcttctatgatgttgagcattgttgggatgttttcatctttgtaaatgcataccatgattcggagc |
32341521 |
T |
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| Q |
517 |
tcagaatcccgcttggtatgttgtattgaacatctttttccagaataatat |
567 |
Q |
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| T |
32341522 |
tcagaatcccgcttggtatgttgtattgaacatctttttccagaattatat |
32341572 |
T |
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