View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_high_32 (Length: 297)
Name: NF8349_high_32
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 31853262 - 31853010
Alignment:
| Q |
1 |
gaacgtgaacatgaacatgaagaggatgaaaatccttatgtttttgaagacagagattttgaaaccaaaatagaaacagatgatggtagagttatggctc |
100 |
Q |
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| T |
31853262 |
gaacgtgaacatgaacatgaagaggatgaaaatccttatgtttttgaagacagagattttgaaaccaaaatagatacagatgatggtagagttatggctc |
31853163 |
T |
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| Q |
101 |
taaacatgtttgatcaaaaatcaaagctgctcagaaactttgagaattatggtttgaccattttagaagctaaaggacatgcttttgtttcaccacacca |
200 |
Q |
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| T |
31853162 |
taaacatgtttgatcaaaaatcaaagctgcttagaaactttgagaattatggtttgaccattttagaagctaaaggacatgcttttgtttcaccacacca |
31853063 |
T |
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| Q |
201 |
ctttgattctgaggttattttcttcaacgtcaagggtatgtattaaagaacaa |
253 |
Q |
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| T |
31853062 |
ctttgattctgaggttattttcttcaacgtcaagggtatgtattaaaaaacaa |
31853010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 31852946 - 31852992
Alignment:
| Q |
249 |
aacaaaacaatcaccaaaatgaataacaaaaatataagtcataaaat |
295 |
Q |
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| T |
31852946 |
aacaaaacaatcaccaaaatgaataacaaaaatataagtcataaaat |
31852992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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