View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8349_high_39 (Length: 264)
Name: NF8349_high_39
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_high_39 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 22180528 - 22180285
Alignment:
| Q |
1 |
ggtgattgattatatagtgtctgttgtattgcctgctgatgcggaactggcagtatctcaagattcgaagatgggtttgaagaagaggtttcaagagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22180528 |
ggtgattgattatatagtgtctgttgtattgcctgctgatgcggaactggcagtatctcaagattcgaagatgggtttgaagaagaggtttcaagagagt |
22180429 |
T |
|
| Q |
101 |
ttggtgtggttgcaatggttgatgtttgaggatgaccctggaaatgctttgagacacctttctagtatggttggtcagggaggtgtttgtggggcagttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
22180428 |
ttggtgtggttgcaatggttgatgtttgaggatgacccgggaaatgctttgagacgcctttctagtatggttggtcagggaggtgtttgcggggcggttt |
22180329 |
T |
|
| Q |
201 |
ggggacgtaccgatattgcttataggtgtaggacttgtgaacat |
244 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22180328 |
ggggacgtactgatattgcttataggtgtaggacttgtgaacat |
22180285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University