View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_high_47 (Length: 250)
Name: NF8349_high_47
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 44390716 - 44390498
Alignment:
| Q |
17 |
cttacattgttctaaattactacaaactttagattaatcattgatctcattaaggaaattgttaactagtcagaatctatagtgacatggatctagtcca |
116 |
Q |
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| T |
44390716 |
cttacattgttctaaattactacaaactttagattaatcattgatctcattaagaaaattgttaaccagtcagaatctatagtgacatggatctagtcta |
44390617 |
T |
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| Q |
117 |
gaaaattagaatnnnnnnnngatagaatctaaattgattcaagctacacaaaatcgatattactcaaaggttaaaacgaaagttgtttttaaacctaaat |
216 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44390616 |
gaaaattagaataaaaaaa-gatagaatctaaattgattcaagctacacaaaatcgatattactcaaaggttaaaacgaaagttgtttttaaacctaaat |
44390518 |
T |
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| Q |
217 |
tttttgctagcaattggttt |
236 |
Q |
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|||||||||||||||||||| |
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| T |
44390517 |
tttttgctagcaattggttt |
44390498 |
T |
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