View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_high_48 (Length: 246)
Name: NF8349_high_48
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_high_48 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 31852720 - 31852948
Alignment:
| Q |
18 |
gttgttagaagttgtaacctcaagatttactggagcagaggcagaggaaggtggcatgtgcaatgctgccacaaaaagcttctcattctcatctctatta |
117 |
Q |
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| T |
31852720 |
gttgttagaagttgtaacctcaagatttactggagcagaggcagaggaaggtggcatgtgcaatgctgcaacaaaaagcttctcattctcatctctatta |
31852819 |
T |
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| Q |
118 |
accaagtacataggtgttcctgcaggtaccctcataatgtcaccagcttcaaggttaaatctctcggttttatcttccatcaccaacccaattattcctc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31852820 |
accaagtacataggtgttcctgcaggtaccctcataatgtcaccagcttcaaggttaaatctctcggttttatcttccatcaccaacccaattattcctc |
31852919 |
T |
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| Q |
218 |
tccctatagtaattcaacaaggaaaaaac |
246 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
31852920 |
tccctatagtaattcaacaaggaaaaaac |
31852948 |
T |
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