View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_high_50 (Length: 241)
Name: NF8349_high_50
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_high_50 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 48275674 - 48275438
Alignment:
| Q |
17 |
aggaagaatcttgcagatgataaaaattaaagtgtaacgttatttcaaatcaaaatacaagggaaggttaagaaggtgaactatattattagttgatcca |
116 |
Q |
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| T |
48275674 |
aggaagaatcttgcagatgataaaaattaaagtgtaacgttatttcaaatcaaaatacaagggaaggttaagaaggtgaactatattattagttgatcca |
48275575 |
T |
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| Q |
117 |
tagttcaaaaatattcatcgatttaagga------------tnnnnnnntcagtatttcactatgcataaatttattttcaataattagatcatcaagtc |
204 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48275574 |
tagttcaaaaatattcatcgatttaaggataaaaaataaattaaaaaaatcagtatttcactatgcataaatttattttcaataattagatcatcaagtc |
48275475 |
T |
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| Q |
205 |
ttatcatatttcatttatttcaaaaatagccataagt |
241 |
Q |
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||||||||||||||||| ||||||||||||||||||| |
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| T |
48275474 |
ttatcatatttcatttaattcaaaaatagccataagt |
48275438 |
T |
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