View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_high_54 (Length: 240)
Name: NF8349_high_54
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_high_54 |
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| [»] chr7 (5 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 2590530 - 2590752
Alignment:
| Q |
18 |
aagaaaataatacttcaatgattattaaaataaatgtgactttaagtcaccttagcacctatacaggtagaaactaactgttacatccatgtgcctctaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
2590530 |
aagaaaataatacttcaatgattattaaaataaatgtcaccttaagtcaccttagcacctgtacaggtagaaactaactgttacatccatgtgcatctaa |
2590629 |
T |
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| Q |
118 |
gtcacttgataactgattagttgacatatagaaatggagacaataaggacagaaaaggatctgatattctaaatattcaaatcaaattgtatgattgtaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2590630 |
gtcacttgataactgattagttgacatatagaaatggagacaataaggacagaaaaggatctgatattctaaatattcaaatcaaattgtatgattgtaa |
2590729 |
T |
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| Q |
218 |
atgaagggttacaacaaatatat |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
2590730 |
atgaagggttacaacaaatatat |
2590752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 10300590 - 10300715
Alignment:
| Q |
18 |
aagaaaataatacttcaatgattattaaaataaatgtgactttaagtcaccttagcacctatacaggtagaaactaactgttacatccatgtgcctctaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||| || |
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| T |
10300590 |
aagaaaataatacttcaatgattattaaaataaatgtcactttaagtcaccttagcacctctacaggtagaaaataacatttacatccatgtgcctccaa |
10300689 |
T |
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| Q |
118 |
gtcacttgat-aactgattagttgac |
142 |
Q |
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| T |
10300690 |
gtcacttgataaactgattagttgac |
10300715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 2617298 - 2617210
Alignment:
| Q |
146 |
tagaaatggagacaataaggacagaaaaggatctgatattctaaatattcaaatcaaattgtatgattgtaaat-gaagggttacaaca |
233 |
Q |
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|||| |||||||||||||||| ||||||||| |||| ||||||| ||||||||||||| || || |||||||| ||||||||| |||| |
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| T |
2617298 |
tagatatggagacaataaggaatgaaaaggatatgatcttctaaagattcaaatcaaatagtgtgtttgtaaatggaagggttaaaaca |
2617210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 237
Target Start/End: Original strand, 10300717 - 10300752
Alignment:
| Q |
202 |
aattgtatgattgtaaatgaagggttacaacaaata |
237 |
Q |
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| T |
10300717 |
aattgtatgattgtaaatgaagggttacaacaaata |
10300752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 2603693 - 2603617
Alignment:
| Q |
146 |
tagaaatggagacaataaggacagaaaaggatctgatattctaaatattcaaatcaaattgtatgattgtaaatgaa |
222 |
Q |
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| T |
2603693 |
tagatatggagacaataaggaatgaaaaggatatgatcttttaaagattcaaatcatatagtgtgtttgtaaatgaa |
2603617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 22223273 - 22223489
Alignment:
| Q |
18 |
aagaaaataatacttcaatgattattaaaataaatgtgactttaagtcaccttagcacctatacaggtagaaactaactgttacatccatgtgcctctaa |
117 |
Q |
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||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||| || |
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| T |
22223273 |
aagaaaataatacttcaatgattgttaaaataaatgt----------caccttagcacctctacaggtagaaaataactgttacatccatgtgcctcaaa |
22223362 |
T |
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| Q |
118 |
gtcacttgataa-ctgattagttgacatatagaaatggagacaataa---ggacagaaaaggatctgatattctaaatattcaaatcaaattgtatgatt |
213 |
Q |
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| T |
22223363 |
gtcacttgataaactgattagttgacatatagatatggagacaataattaggacagaaaaggatatgatattctaaatattcaaatcaaattgtaagatt |
22223462 |
T |
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| Q |
214 |
gtaaatgaagggttacaacaaatatat |
240 |
Q |
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| T |
22223463 |
gtaaatgaagggttacaacaaatatat |
22223489 |
T |
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