View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_high_58 (Length: 231)
Name: NF8349_high_58
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_high_58 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 29446810 - 29446579
Alignment:
| Q |
1 |
tcacaagttggtagcttctcaaaggaacaacatctttgtctattacaatatatattctactcaaagaagaatcacaccagaatcataca-acatacatat |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| || |
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| T |
29446810 |
tcacaagttggtagcttctcaaaggaacaacatctttgtctattacaatatatattctcttcaaagaagaatcacaccagaatcatacacacatacagat |
29446711 |
T |
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| Q |
100 |
atatagccataaggacctctaatgcggtccatcgcctttttgtgacttgccggtttaccaacctatagccaaagcttctcttcctacggagaactaagtg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29446710 |
atatagccataaggacctctaatgcggtccatcgcctttttgtgacttgccggtttaccaacctatagccaaagcttctcttcctacggagaactaagtg |
29446611 |
T |
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| Q |
200 |
catggttggaatcatagtgagcttgacgatat |
231 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
29446610 |
catggttggaatcatagtgagcttgacgatat |
29446579 |
T |
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