View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_high_7 (Length: 461)
Name: NF8349_high_7
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 54 - 445
Target Start/End: Complemental strand, 52914802 - 52914411
Alignment:
| Q |
54 |
gtagttgaaaattaaagtagttggacccaaacaccctgacttggaacttcttgatggaccacaaatagtaaataatatcccggaggtgcaagaatgggtg |
153 |
Q |
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| T |
52914802 |
gtagttgaaaattagagtagttggacccaaacaccctgacttggaacttcttgatggaccacaaatagtaaataatatcccggaggtgcaagaatgggtg |
52914703 |
T |
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| Q |
154 |
aatttggtattgccacttcaacttggtatgttgatgtcgattctccaacaacatttttactactactcaattcatcaagcaccaacaacctttgattcat |
253 |
Q |
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| T |
52914702 |
aatttggtattgccacttcaacttggtatgttgatgtcgattctccaacaacatttttactactactcaattcatcaagcaccaacaacctttgattcat |
52914603 |
T |
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| Q |
254 |
tgagaaagaatgcgtgttaaaagacggtgcatacattgtcactgacaccatgtttttcatcaatgttgccttcacctgaaaccgaaccttcaatttttga |
353 |
Q |
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| T |
52914602 |
tgagaaagaatgcgtgttaaaagacggtgcatacattgtcactgacaccatgtttttcatcaatgttgccttcacttgaaaccgaaccttcaatttttga |
52914503 |
T |
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| Q |
354 |
gcgtatttcaatttcgtttgtgattggggtgcaggaaacaccattataggacgcacatcattgaatcctaactctaaatacgaaggtgaaaa |
445 |
Q |
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| T |
52914502 |
gcgtatttcaatttcgtttgtgattggggtgcaggaaacaccattataggacgcacatcattgaatcccaactctaaatacgaaggtgaaaa |
52914411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 155
Target Start/End: Complemental strand, 7571646 - 7571549
Alignment:
| Q |
58 |
ttgaaaattaaagtagttggacccaaacaccctgacttggaacttcttgatggaccacaaatagtaaataatatcccggaggtgcaagaatgggtgaa |
155 |
Q |
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| T |
7571646 |
ttgaaaattaaagtatttgtatccaaattccttcactaggaatttctttatgaaccacaaatagtagataaaatccaggaggcgcaagaataggtgaa |
7571549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 531654 - 531611
Alignment:
| Q |
233 |
caccaacaacctttgattcattgagaaagaatgcgtgttaaaag |
276 |
Q |
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| T |
531654 |
caccaacaacctttgattcattgagaatgaatgtgtattaaaag |
531611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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