View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8349_low_1 (Length: 1055)

Name: NF8349_low_1
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8349_low_1
NF8349_low_1
[»] chr2 (6 HSPs)
chr2 (796-1038)||(44686108-44686350)
chr2 (45-439)||(10939807-10940197)
chr2 (45-439)||(10945676-10946066)
chr2 (823-1014)||(27648323-27648512)
chr2 (824-1014)||(36338908-36339097)
chr2 (824-921)||(6489861-6489957)
[»] chr6 (7 HSPs)
chr6 (45-439)||(24043336-24043726)
chr6 (820-1033)||(14802747-14802964)
chr6 (859-1014)||(353012-353167)
chr6 (850-1038)||(12273588-12273775)
chr6 (955-1038)||(31405611-31405694)
chr6 (948-1001)||(10042270-10042323)
chr6 (861-904)||(31405733-31405776)
[»] chr1 (5 HSPs)
chr1 (45-439)||(49389289-49389679)
chr1 (777-1014)||(47833726-47833970)
chr1 (845-1038)||(25588688-25588880)
chr1 (848-1013)||(2079040-2079202)
chr1 (954-1014)||(26310397-26310455)
[»] chr3 (8 HSPs)
chr3 (205-473)||(14656150-14656405)
chr3 (854-1038)||(24734239-24734423)
chr3 (842-1014)||(53833904-53834076)
chr3 (854-1014)||(53837502-53837662)
chr3 (845-923)||(16196767-16196845)
chr3 (850-938)||(3083767-3083853)
chr3 (850-938)||(7910312-7910400)
chr3 (955-1031)||(7909508-7909582)
[»] chr5 (4 HSPs)
chr5 (805-1011)||(33827449-33827655)
chr5 (855-1000)||(17895633-17895778)
chr5 (824-1005)||(33544900-33545082)
chr5 (622-672)||(11129216-11129266)
[»] chr8 (3 HSPs)
chr8 (828-1013)||(15051490-15051673)
chr8 (824-1001)||(24542630-24542808)
chr8 (879-984)||(30181936-30182043)
[»] chr7 (4 HSPs)
chr7 (269-439)||(13817306-13817471)
chr7 (54-238)||(13817122-13817308)
chr7 (835-1001)||(38787055-38787219)
chr7 (860-929)||(4648282-4648351)
[»] chr4 (6 HSPs)
chr4 (565-673)||(27070875-27070983)
chr4 (565-673)||(27150961-27151069)
chr4 (824-931)||(54572844-54572951)
chr4 (419-475)||(27065929-27065985)
chr4 (419-475)||(27087032-27087088)
chr4 (956-1014)||(54572963-54573021)


Alignment Details
Target: chr2 (Bit Score: 183; Significance: 2e-98; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 796 - 1038
Target Start/End: Complemental strand, 44686350 - 44686108
Alignment:
Q  796 attttattcagtcactaataaaaaattataagttcccatgagcatcaataaatggttcctgagaccttgctaatccacgtgcggtgctagcaagaagcga 895  Q
    |||| ||| |||||||||||| ||||||||||||||||| |||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  44686350 atttaatttagtcactaataacaaattataagttcccataagcatccataagtgattcctgagaccttgctaatccacgtgcggtgctagcaagaagcga 44686251  T
Q  896 ctgttgtatcctggagagtattagctataagacctatcacatcggaaaacttatccaaggtggcgaaatactcttaagcctagtgcattttgcatgcctc 995  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  44686250 ctgttgtatcctggagagtattagctatgagacctatcgcatcggataacttatccgaggtggcgaaatactcttaagcccagtgcattttgcatgcctc 44686151  T
Q  996 agtcaataatcgataagttctctattttctatttaatttgatg 1038  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||    
T  44686150 agtcaataatcgagaagttttctattctctatttaatttgatg 44686108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 182; E-Value: 7e-98
Query Start/End: Original strand, 45 - 439
Target Start/End: Complemental strand, 10940197 - 10939807
Alignment:
Q  45 atgcctaagaaaatggatgcaagcatgagttattgaaaaatgatgtagaa-tttattcaaaatgtatagagttgtgatatacatgttaaaactgaatatc 143  Q
    |||||||| ||||| || ||||||||||||| ||||||| |||| || || |||||||||||||||||||||||||||||||||||||||  ||||||||    
T  10940197 atgcctaa-aaaatagaagcaagcatgagttgttgaaaagtgatataaaaatttattcaaaatgtatagagttgtgatatacatgttaaagttgaatatc 10940099  T
Q  144 ttgtgaacctacatattaaaatatagtactgatacgtcgactttagctttgataaatttt--gagatgtattttt-gtatggacatgcaattttgagcta 240  Q
    |||| |||||||||  |||||||||||| ||||| |||  |||||| |||||||||||||  ||||||||||||| || ||| ||||||||||||||||     
T  10940098 ttgttaacctacat--taaaatatagtattgatatgtcatctttagttttgataaattttttgagatgtattttttgtgtgggcatgcaattttgagctt 10940001  T
Q  241 gcttctccactgatctaacatgtgttgcagcattgttcttttaagattattaaaataaaatgatcttctgggatctatttggat-cttactatgacattc 339  Q
    ||||||| |  ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  10940000 gcttctcgatcgatctaacattcgttgcagcattgttcttttaagattattaaaataaaatgatcttctggggtctatttggatccttactatgacattc 10939901  T
Q  340 atatgtttataagaaatggaagtgtattcagtaacaattaagatgttattaataaatccacgatgatacatatatgtgtatgagtaaaacaagtttgata 439  Q
      || || | |||| ||||||||||| || |||||    ||||||||||||| ||||||||  |||||| |||||||||||||||||||||||| |||||    
T  10939900 --attttaaaaagagatggaagtgtactccgtaac----aagatgttattaagaaatccactgtgatacctatatgtgtatgagtaaaacaagtgtgata 10939807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 45 - 439
Target Start/End: Complemental strand, 10946066 - 10945676
Alignment:
Q  45 atgcctaagaaaatggatgcaagcatgagttattgaaaaatgatgtagaa-tttattcaaaatgtatagagttgtgatatacatgttaaaactgaatatc 143  Q
    |||||||| ||||| |||||||||||||||| ||||||| |||| || || |||||||||||||||||||||||||||||||||||||||  ||||||||    
T  10946066 atgcctaa-aaaatagatgcaagcatgagttgttgaaaagtgatataaaaatttattcaaaatgtatagagttgtgatatacatgttaaagttgaatatc 10945968  T
Q  144 ttgtgaacctacatattaaaatatagtactgatacgtcgactttagctttgataaatttt--gagatgtattttt-gtatggacatgcaattttgagcta 240  Q
    |||| |||||||||  |||||||||||||||||| |||  |||||| |||||||||||||  ||||||||||||| || ||| ||||||||||||||||     
T  10945967 ttgttaacctacat--taaaatatagtactgatatgtcatctttagttttgataaattttttgagatgtattttttgtgtgggcatgcaattttgagctt 10945870  T
Q  241 gcttctccactgatctaacatgtgttgcagcattgttcttttaagattattaaaataaaatgatcttctgggatctatttggat-cttactatgacattc 339  Q
    ||||||| |  ||||||||||  |||||||||||||||||||||||||||||||||||||| ||||| || | ||||||||||| |||||||||||||||    
T  10945869 gcttctcgatcgatctaacattcgttgcagcattgttcttttaagattattaaaataaaattatcttttgtggtctatttggatccttactatgacattc 10945770  T
Q  340 atatgtttataa-gaaatggaagtgtattcagtaacaattaagatgttattaataaatccacgatgatacatatatgtgtatgagtaaaacaagtttgat 438  Q
    ||   |||| || || ||||||||||| || |||||    ||||||||||||| ||||||||  |||||| |||||||||||||||||||||||| ||||    
T  10945769 at---tttaaaaggagatggaagtgtactccgtaac----aagatgttattaagaaatccactgtgatacctatatgtgtatgagtaaaacaagtgtgat 10945677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 823 - 1014
Target Start/End: Original strand, 27648323 - 27648512
Alignment:
Q  823 ataagttcccatgagcatcaataaatggttcctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagcta 922  Q
    ||||||||||||||||||| |||| |||||  |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27648323 ataagttcccatgagcatccataagtggtttttgagaccttgttaatccatgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagcta 27648422  T
Q  923 taagacctatcacatcggaaaacttatccaaggtggcgaaatactcttaagcctagtgcattttgcatgcctcagtcaataatcgataagtt 1014  Q
    | ||||||||| ||||||| || |||||||||||||||||||||| ||||| | | ||||  || || |||||| |||||||||||||||||    
T  27648423 tgagacctatcgcatcggataatttatccaaggtggcgaaatacttttaagtccaatgca--ttccacgcctcaatcaataatcgataagtt 27648512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 824 - 1014
Target Start/End: Complemental strand, 36339097 - 36338908
Alignment:
Q  824 taagttcccatgagcatcaataaatggttcctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagctat 923  Q
    |||||| ||||||||||  | || ||||| |||||||||| ||||| ||| |||||||||||||||||  |||||||||||||||||||||| |||| |     
T  36339097 taagtttccatgagcattcaaaagtggtttctgagaccttactaattcacatgcggtgctagcaagaactgactgttgtatcctggagagtactagccac 36338998  T
Q  924 aagacctatcacatcggaaaacttatccaaggtggcgaaatactcttaagcctagtgcattttgcatgcctcagtcaataatcgataagtt 1014  Q
     ||| |||   ||||||  ||| ||| | || ||||||||||||||||| || ||||| |  |||| ||||||||||||| ||||||||||    
T  36338997 gagatctactgcatcgggtaacctattcgagatggcgaaatactcttaaacc-agtgcttcgtgcacgcctcagtcaatattcgataagtt 36338908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 824 - 921
Target Start/End: Original strand, 6489861 - 6489957
Alignment:
Q  824 taagttcccatgagcatcaataaatggttcctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagct 921  Q
    |||||| ||||||||||| | ||||||||  ||||||| ||||||| || |||||| |||||||| | | ||| |||||||||| ||||||| |||||    
T  6489861 taagtttccatgagcatccaaaaatggtt-ttgagaccctgctaattcatgtgcggcgctagcaaaaggtgaccgttgtatcctcgagagtactagct 6489957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 182; Significance: 7e-98; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 7e-98
Query Start/End: Original strand, 45 - 439
Target Start/End: Complemental strand, 24043726 - 24043336
Alignment:
Q  45 atgcctaagaaaatggatgcaagcatgagttattgaaaaatgatgtagaa-tttattcaaaatgtatagagttgtgatatacatgttaaaactgaatatc 143  Q
    |||||||| ||||| || ||||||||||||| ||||||| |||| || || |||||||||||||||||||||||||||||||||||||||  ||||||||    
T  24043726 atgcctaa-aaaatagaagcaagcatgagttgttgaaaagtgatataaaaatttattcaaaatgtatagagttgtgatatacatgttaaagttgaatatc 24043628  T
Q  144 ttgtgaacctacatattaaaatatagtactgatacgtcgactttagctttgataaatttt--gagatgtattttt-gtatggacatgcaattttgagcta 240  Q
    |||| |||||||||  |||||||||||| ||||| |||  |||||| |||||||||||||  ||||||||||||| || ||| ||||||||||||||||     
T  24043627 ttgttaacctacat--taaaatatagtattgatatgtcatctttagttttgataaattttttgagatgtattttttgtgtgggcatgcaattttgagctt 24043530  T
Q  241 gcttctccactgatctaacatgtgttgcagcattgttcttttaagattattaaaataaaatgatcttctgggatctatttggat-cttactatgacattc 339  Q
    ||||||| |  ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  24043529 gcttctcgatcgatctaacattcgttgcagcattgttcttttaagattattaaaataaaatgatcttctggggtctatttggatccttactatgacattc 24043430  T
Q  340 atatgtttataagaaatggaagtgtattcagtaacaattaagatgttattaataaatccacgatgatacatatatgtgtatgagtaaaacaagtttgata 439  Q
      || || | |||| ||||||||||| || |||||    ||||||||||||| ||||||||  |||||| |||||||||||||||||||||||| |||||    
T  24043429 --attttaaaaagagatggaagtgtactccgtaac----aagatgttattaagaaatccactgtgatacctatatgtgtatgagtaaaacaagtgtgata 24043336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 820 - 1033
Target Start/End: Original strand, 14802747 - 14802964
Alignment:
Q  820 attataagttcccatgagcatcaataaatggttcctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattag 919  Q
    |||||||||| ||||||||||| | || || ||||||| ||||||||||| ||||||| |||||||||||||| |  |||||||||||||||||||||||    
T  14802747 attataagtttccatgagcatcca-aagtgtttcctgaaaccttgctaattcacgtgcagtgctagcaagaagtggttgttgtatcctggagagtattag 14802845  T
Q  920 ctataagacctatcacatcggaaaacttatccaaggtggcgaa----atactcttaagcctagtgcattttgcatgcctcagtcaataatcgataag-tt 1014  Q
    |||| ||| ||||| ||||| | |||||||   ||||||| ||    |||||||||| || ||||  || |||||||||||| |||||||||||||| ||    
T  14802846 ctatcagatctatcgcatcgaataacttatttgaggtggcaaaatatatactcttaaacccagtgttttgtgcatgcctcagccaataatcgataagttt 14802945  T
Q  1015 ctctattttctatttaatt 1033  Q
     |||||| |||||||||||    
T  14802946 ttctattctctatttaatt 14802964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 859 - 1014
Target Start/End: Original strand, 353012 - 353167
Alignment:
Q  859 accttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagctataagacctatcacatcggaaaacttatccaaggtgg 958  Q
    ||||||||||| |||||||| | ||||||||||| || | ||||||||||||||||||||||| | ||||||||| ||||||| ||  ||| |  |||||    
T  353012 accttgctaattcacgtgcgatactagcaagaagtgattattgtatcctggagagtattagctgtgagacctatcgcatcggataatctattcggggtgg 353111  T
Q  959 cgaaatactcttaagcctagtgcattttgcatgcctcagtcaataatcgataagtt 1014  Q
    ||||||||||||||||| ||||| |  |||| ||||||||||||||||||| ||||    
T  353112 cgaaatactcttaagcccagtgcttcgtgcacgcctcagtcaataatcgatgagtt 353167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 850 - 1038
Target Start/End: Original strand, 12273588 - 12273775
Alignment:
Q  850 gttcctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagctataagacctatcacatcggaaaacttat 949  Q
    |||| ||||||||||||||| ||| || ||||||||||||||| || |||||||||||  ||||||||| |||| ||||||||| ||| ||   |   ||    
T  12273588 gttcatgagaccttgctaattcacatgtggtgctagcaagaagtgattgttgtatcctaaagagtattaactatgagacctatcgcattgggtgatccat 12273687  T
Q  950 ccaaggtggcgaaatactcttaagcctagtgcattttgcatgcctcagtcaata--atcgataagttctctattttctatttaatttgatg 1038  Q
    ||  | |||| |||||||||||||||  |||||  ||||| |||||| ||||||  ||||||||||| |||||| ||||||||||||||||    
T  12273688 ccgggatggcaaaatactcttaagcccggtgca--ttgcacgcctcaatcaataatatcgataagtt-tctattctctatttaatttgatg 12273775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 955 - 1038
Target Start/End: Complemental strand, 31405694 - 31405611
Alignment:
Q  955 gtggcgaaatactcttaagcctagtgcattttgcatgcctcagtcaataatcgataagttctctattttctatttaatttgatg 1038  Q
    ||||||||||||||||||||  | ||||||||||| | |||| |||||||||||||| || |||||| ||||||||||||||||    
T  31405694 gtggcgaaatactcttaagctcaatgcattttgcacgtctcactcaataatcgataaattttctattctctatttaatttgatg 31405611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 948 - 1001
Target Start/End: Original strand, 10042270 - 10042323
Alignment:
Q  948 atccaaggtggcgaaatactcttaagcctagtgcattttgcatgcctcagtcaa 1001  Q
    |||| |||||| |||||| ||||||||| |||||||||||||||||||||||||    
T  10042270 atccgaggtggtgaaatattcttaagcccagtgcattttgcatgcctcagtcaa 10042323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 861 - 904
Target Start/End: Complemental strand, 31405776 - 31405733
Alignment:
Q  861 cttgctaatccacgtgcggtgctagcaagaagcgactgttgtat 904  Q
    ||||||||| ||||||||||| |||||||||| |||||||||||    
T  31405776 cttgctaattcacgtgcggtgttagcaagaagtgactgttgtat 31405733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 182; Significance: 7e-98; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 7e-98
Query Start/End: Original strand, 45 - 439
Target Start/End: Complemental strand, 49389679 - 49389289
Alignment:
Q  45 atgcctaagaaaatggatgcaagcatgagttattgaaaaatgatgtagaa-tttattcaaaatgtatagagttgtgatatacatgttaaaactgaatatc 143  Q
    |||||||| ||||| || ||||||||||||| ||||||| |||| || || |||||||||||||||||||||||||||||||||||||||  ||||||||    
T  49389679 atgcctaa-aaaatagaagcaagcatgagttgttgaaaagtgatataaaaatttattcaaaatgtatagagttgtgatatacatgttaaagttgaatatc 49389581  T
Q  144 ttgtgaacctacatattaaaatatagtactgatacgtcgactttagctttgataaatttt--gagatgtattttt-gtatggacatgcaattttgagcta 240  Q
    |||| |||||||||  |||||||||||||||||| |||  |||||| |||||||||||||  ||||||||||||| |||||| ||||||||||||||||     
T  49389580 ttgttaacctacat--taaaatatagtactgatatgtcatctttagttttgataaattttttgagatgtattttttgtatgggcatgcaattttgagctt 49389483  T
Q  241 gcttctccactgatctaacatgtgttgcagcattgttcttttaagattattaaaataaaatgatcttctgggatctatttggat-cttactatgacattc 339  Q
    ||||||| |  ||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||| |||||||||||||||    
T  49389482 gcttctcgatcgatctaacattcgttgcagcattgttcttttaagattattaaaataaaataatcttctgaggtctatttggatccttactatgacattc 49389383  T
Q  340 atatgtttataagaaatggaagtgtattcagtaacaattaagatgttattaataaatccacgatgatacatatatgtgtatgagtaaaacaagtttgata 439  Q
      || || | |||| ||||||||||| || |||||    ||||||||||||| ||||||||  |||||| |||||||||||||||||||||||| |||||    
T  49389382 --attttaaaaagagatggaagtgtactccgtaac----aagatgttattaagaaatccactgtgatacctatatgtgtatgagtaaaacaagtgtgata 49389289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 777 - 1014
Target Start/End: Original strand, 47833726 - 47833970
Alignment:
Q  777 atggcttctttcatctcttattttattcagtcactaataaaaaat-------tataagttcccatgagcatcaataaatggttcctgagaccttgctaat 869  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||       |||||||||||||||||||| |||| ||||| ||||||||| | ||||    
T  47833726 atggcttctttcatctcttattttatttagtcactaataacaaataacaaattataagttcccatgagcatccataagtggtttctgagacctcgttaat 47833825  T
Q  870 ccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagctataagacctatcacatcggaaaacttatccaaggtggcgaaatactct 969  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||  |||||||  | | ||||  ||||||||||||||||    
T  47833826 ccacgtgcggtgctagcaagaagcgactgttgtattctggagagtattagctatgagacctattgcatcggatgattcatccggggtggcgaaatactct 47833925  T
Q  970 taagcctagtgcattttgcatgcctcagtcaataatcgataagtt 1014  Q
    |||||| | ||| |  |||||||||||||||||||||||||||||    
T  47833926 taagcccaatgcttcatgcatgcctcagtcaataatcgataagtt 47833970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 845 - 1038
Target Start/End: Original strand, 25588688 - 25588880
Alignment:
Q  845 aaatggttcctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagctataagacctatcacatcggaaaa 944  Q
    |||| |||| ||||||||||||||| |||||||||||||||||||||| ||| | ||||| |||||||||| ||||||| ||| ||| |  |||| | ||    
T  25588688 aaattgttcatgagaccttgctaattcacgtgcggtgctagcaagaagtgaccg-tgtattctggagagtactagctatgagatctaccgtatcgaataa 25588786  T
Q  945 cttatccaaggtggcgaaatactcttaagcctagtgcattttgcatgcctcagtcaataatcgataagttctctattttctatttaatttgatg 1038  Q
      ||| |  |||||||||||||||||||||  ||| |  | ||||  ||| ||||||||||||||||||| |||||| ||||||||||||||||    
T  25588787 tctattcgtggtggcgaaatactcttaagcaaagtactatgtgcacaccttagtcaataatcgataagttttctattctctatttaatttgatg 25588880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 848 - 1013
Target Start/End: Complemental strand, 2079202 - 2079040
Alignment:
Q  848 tggttcctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagctataagacctatcacatcggaaaactt 947  Q
    |||||| |||||||||||||||  |||||||||| ||| |||| | ||||||||||||||||||| |||||||||| ||||| | | ||||   |  | |    
T  2079202 tggttcatgagaccttgctaatttacgtgcggtgttagtaagacgtgactgttgtatcctggagaatattagctatgagaccaaccgcatcatgatccat 2079103  T
Q  948 atccaaggtggcgaaatactcttaagcctagtgcattttgcatgcctcagtcaataatcgataagt 1013  Q
    ||  | |||||| ||||||||||||| | | | ||||||||| ||||||||||| |||||||||||    
T  2079102 at--atggtggcaaaatactcttaagtccaattcattttgcacgcctcagtcaa-aatcgataagt 2079040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 954 - 1014
Target Start/End: Complemental strand, 26310455 - 26310397
Alignment:
Q  954 ggtggcgaaatactcttaagcctagtgcattttgcatgcctcagtcaataatcgataagtt 1014  Q
    |||||| ||||||||||||||||||||||  | ||| ||||||||||||||||||||||||    
T  26310455 ggtggcaaaatactcttaagcctagtgca--tcgcaagcctcagtcaataatcgataagtt 26310397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 1e-53; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 205 - 473
Target Start/End: Original strand, 14656150 - 14656405
Alignment:
Q  205 agatgtatttttgtatggacatgcaattttgagctagcttctccactgatctaacatgtgttgcagcattgttcttttaagattattaaaat-aaaatga 303  Q
    |||||||||||||| ||||||| ||||||||||||| |||||  || |||||||||||| ||||| ||||||| |||||||||||||||||| |||||||    
T  14656150 agatgtatttttgtgtggacatacaattttgagctatcttcttgacggatctaacatgtcttgcaacattgtttttttaagattattaaaataaaaatga 14656249  T
Q  304 tcttctgggatctatttggatcttactatgacattcatatgtttataagaaatggaagtgtattcagtaacaattaagatgttattaataaatccacgat 403  Q
    |||||| ||||||||       ||||||||||||||  || || ||||||||||||||||||||||||||||   |||||||||| || |||||||||||    
T  14656250 tcttctaggatctat-------ttactatgacattc--attttaataagaaatggaagtgtattcagtaaca---aagatgttatgaagaaatccacgat 14656337  T
Q  404 gatacatatatgtgtatgagtaaaacaagtttgatagacatgttgtcacctaaaattaatttaagtagac 473  Q
     |||||||||  ||||||  |||||||||| |||||||||||||||| | || || |||| |||||||||    
T  14656338 catacatata--tgtatgtataaaacaagtgtgatagacatgttgtcgcttagaaataatctaagtagac 14656405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 854 - 1038
Target Start/End: Complemental strand, 24734423 - 24734239
Alignment:
Q  854 ctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagctataagacctatcacatcggaaaacttatccaa 953  Q
    |||||||||||||||| ||| ||||||||||| |||| | |||||||||||||||||||||||||||||| |||||||   |||| || ||| ||||       
T  24734423 ctgagaccttgctaattcacatgcggtgctagtaagatgtgactgttgtatcctggagagtattagctatgagacctactgcatcagataacctatctgg 24734324  T
Q  954 ggtggcgaaatactcttaagcctagtgcattttgcatgcctcagtcaataatcgataagttctctattttctatttaatttgatg 1038  Q
    ||||||||| ||||||||||    |||| |  ||||  |||||||||||||| |||||||| |||||| ||||||||||||||||    
T  24734323 ggtggcgaagtactcttaagttcggtgcttcgtgcacacctcagtcaataattgataagttttctattctctatttaatttgatg 24734239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 842 - 1014
Target Start/End: Complemental strand, 53834076 - 53833904
Alignment:
Q  842 aataaatggttcctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagctataagacctatcacatcgga 941  Q
    ||||| |||||||||||||||||||||| ||| ||||||||||| |||||| || |||||||||||| |||||||||||||| ||||||||| ||||||     
T  53834076 aataagtggttcctgagaccttgctaattcacatgcggtgctaggaagaagtgattgttgtatcctgcagagtattagctatgagacctatcgcatcggg 53833977  T
Q  942 aaacttatccaaggtggcgaaatactcttaagcctagtgcattttgcatgcctcagtcaataatcgataagtt 1014  Q
      | ||||||  | |||| |||||||||| |||| ||||| |  |||| ||||||  ||||||||||||||||    
T  53833976 ttatttatccgggatggcaaaatactcttcagcccagtgcttcatgcacgcctcaaccaataatcgataagtt 53833904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 854 - 1014
Target Start/End: Complemental strand, 53837662 - 53837502
Alignment:
Q  854 ctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagctataagacctatcacatcggaaaacttatccaa 953  Q
    |||||||||||||||| ||  |||||||||||||| ||| || |||||||||||| ||||||||| |||| ||| ||||| |||||||  | | |||| |    
T  53837662 ctgagaccttgctaattcatatgcggtgctagcaaaaagtgattgttgtatcctgcagagtattaactatgagatctatcgcatcggatgattcatccga 53837563  T
Q  954 ggtggcgaaatactcttaagcctagtgcattttgcatgcctcagtcaataatcgataagtt 1014  Q
    |||||||||||||||||||||| | | | |  |||| ||||||||||||||||||||||||    
T  53837562 ggtggcgaaatactcttaagcccaatacttcatgcacgcctcagtcaataatcgataagtt 53837502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 845 - 923
Target Start/End: Complemental strand, 16196845 - 16196767
Alignment:
Q  845 aaatggttcctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagctat 923  Q
    ||||||||| |||||||||| |||| ||| |||||||||||||||||| || ||||||||| |||| |||| |||||||    
T  16196845 aaatggttcatgagaccttgttaattcacatgcggtgctagcaagaagtgattgttgtatcatggaaagtactagctat 16196767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 850 - 938
Target Start/End: Original strand, 3083767 - 3083853
Alignment:
Q  850 gttcctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagctataagacctatcacatc 938  Q
    |||| |||||||||||  || ||| |||||||||||||||||| ||||| ||||| ||| |||||||||||||| ||||||||| ||||    
T  3083767 gttcatgagaccttgc--attcacatgcggtgctagcaagaagtgactgctgtattctgaagagtattagctatgagacctatcgcatc 3083853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 850 - 938
Target Start/End: Complemental strand, 7910400 - 7910312
Alignment:
Q  850 gttcctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagctataagacctatcacatc 938  Q
    ||||| |||||||| ||| | ||| ||||||| |||||||||| ||||||||||||||| |||||| |||| || ||| ||| ||||||    
T  7910400 gttcccgagaccttactatttcacatgcggtgttagcaagaagtgactgttgtatcctgaagagtactagccatgagatctaccacatc 7910312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 955 - 1031
Target Start/End: Complemental strand, 7909582 - 7909508
Alignment:
Q  955 gtggcgaaatactcttaagcctagtgcattttgcatgcctcagtcaataatcgataagttctctattttctatttaa 1031  Q
    ||||| ||||||||||||||| | ||||||  ||| |||||||||||||||| ||||||| ||| || |||| ||||    
T  7909582 gtggcaaaatactcttaagcccaatgcatt--gcacgcctcagtcaataatcaataagttttcttttctctacttaa 7909508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 1e-50; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 805 - 1011
Target Start/End: Original strand, 33827449 - 33827655
Alignment:
Q  805 agtcactaataaaaaattataagttcccatgagcatcaataaatggttcctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtat 904  Q
    |||||||||||| |||||||||||||||| ||||||| |||| || ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33827449 agtcactaataataaattataagttcccaagagcatccataagtgattcttgagaccttgctaatccacgtgcggtgctagcaagaagcgattgttgtat 33827548  T
Q  905 cctggagagtattagctataagacctatcacatcggaaaacttatccaaggtggcgaaatactcttaagcctagtgcattttgcatgcctcagtcaataa 1004  Q
    |||||||||||||| |||| ||||||||| |||| |   | | ||||  |||||| ||||||||||||||| ||||| |  |||| |||||||||||| |    
T  33827549 cctggagagtattatctatgagacctatcgcatcaggtgattcatccggggtggcaaaatactcttaagcccagtgcttcgtgcacgcctcagtcaatga 33827648  T
Q  1005 tcgataa 1011  Q
     ||||||    
T  33827649 ccgataa 33827655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 855 - 1000
Target Start/End: Original strand, 17895633 - 17895778
Alignment:
Q  855 tgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagctataagacctatcacatcggaaaacttatccaag 954  Q
    ||||||||||||| | || |||||||| |||||||||| || ||||||||||||||||||| ||||| | ||||| |  | | |||| |||| ||||  |    
T  17895633 tgagaccttgctagttcatgtgcggtgttagcaagaagtgattgttgtatcctggagagtactagctgtgagaccaactataccggataactaatccgtg 17895732  T
Q  955 gtggcgaaatactcttaagcctagtgcattttgcatgcctcagtca 1000  Q
    | ||| ||||||||||||||| ||||| ||||||  ||||||||||    
T  17895733 gcggcaaaatactcttaagccaagtgctttttgctagcctcagtca 17895778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 824 - 1005
Target Start/End: Complemental strand, 33545082 - 33544900
Alignment:
Q  824 taagttcccatgagcatc-aataaatggttcctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagcta 922  Q
    ||||||||| |||||||| || || | |||||||| |  || ||||| |||||||| ||||||||||| | ||||| |||||| ||||||||| ||||||    
T  33545082 taagttcccttgagcatccaagaagttgttcctgatatttttctaattcacgtgcgatgctagcaagatgtgactgctgtatcatggagagtactagcta 33544983  T
Q  923 taagacctatcacatcggaaaacttatccaaggtggcgaaatactcttaagcctagtgcattttgcatgcctcagtcaataat 1005  Q
    | ||||| | |||||| |   |   ||||| |||| | |||||||||||| |  | || ||||||||||||||||||||||||    
T  33544982 tgagaccaaccacatcaggtgatccatccatggtgcctaaatactcttaaactcattgtattttgcatgcctcagtcaataat 33544900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 622 - 672
Target Start/End: Complemental strand, 11129266 - 11129216
Alignment:
Q  622 ttttacttgtttttagtccaagctttgatttggtctttgtaacaactattt 672  Q
    ||||||||| ||||| |||| ||||||||||||||||||||||||||||||    
T  11129266 ttttacttgcttttactccaggctttgatttggtctttgtaacaactattt 11129216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 4e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 828 - 1013
Target Start/End: Original strand, 15051490 - 15051673
Alignment:
Q  828 ttcccatgagcatcaataaatggttcctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggag-agtattagctataag 926  Q
    ||||| |||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||| ||    
T  15051490 ttcccttgagcatccataagtggtttctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgtt-tattctggagaagtattagctatgag 15051588  T
Q  927 acctatcacatcggaaaacttatccaaggtggcgaaatactcttaagcctagtgcattttgcatgcctcagtcaataatcgataagt 1013  Q
    | ||||| ||||||| |||||||||  | ||||||||||||||||| || | ||||  ||||| | |||||||||||||||||||||    
T  15051589 atctatcgcatcggataacttatccgggatggcgaaatactcttaaacccaatgca--ttgcacgtctcagtcaataatcgataagt 15051673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 824 - 1001
Target Start/End: Original strand, 24542630 - 24542808
Alignment:
Q  824 taagttcccatgagcatc-aataaatggttcctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagcta 922  Q
    ||||||||| | |||||| || |||| |||| ||||||||||||||| ||||||||||||||||||||   || |||||||| |||||||||| ||||||    
T  24542630 taagttccctttagcatccaagaaattgttcatgagaccttgctaattcacgtgcggtgctagcaagatatgattgttgtattctggagagtactagcta 24542729  T
Q  923 taagacctatcacatcggaaaacttatccaaggtggcgaaatactcttaagcctagtgcattttgcatgcctcagtcaa 1001  Q
    | ||| | | | |||||||  |   ||||    |||| ||||||||||||| | | ||||||||||| |||||||||||    
T  24542730 tgagatcaaccgcatcggatgatccatccgtaatggcaaaatactcttaagtccaatgcattttgcacgcctcagtcaa 24542808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 879 - 984
Target Start/End: Complemental strand, 30182043 - 30181936
Alignment:
Q  879 gtgctagcaagaagcgactgttgtatcctggagagtattagctataagacctatcac--atcggaaaacttatccaaggtggcgaaatactcttaagcct 976  Q
    |||||||||||||| |||||||||||| || |||||| |||| || ||||||  | |  |||||  |||||||||  | |||||||||||||||||||||    
T  30182043 gtgctagcaagaagtgactgttgtatcttgcagagtactagcaatgagacctgccgcgcatcgggtaacttatccctgatggcgaaatactcttaagcct 30181944  T
Q  977 agtgcatt 984  Q
    ||||||||    
T  30181943 agtgcatt 30181936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 269 - 439
Target Start/End: Original strand, 13817306 - 13817471
Alignment:
Q  269 agcattgttcttttaagattattaaaataaaatgatcttctgggatctatttggat-cttactatgacattcatatgtttataagaaatggaagtgtatt 367  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||  || || | |||  ||||||||||| |    
T  13817306 agcattgttcttttaagattattaaaataaaatgatcttctggggtctatttggatccttactatgacattc--attttaaaaagtgatggaagtgtact 13817403  T
Q  368 cagtaacaattaagatgttattaataaatccacgatgatacatatatgtgtatgagtaaaacaagtttgata 439  Q
    | |||||    ||||||||||||| ||||||||  |||||| |||||||||||||||||||||||| |||||    
T  13817404 ccgtaac----aagatgttattaagaaatccactgtgatacctatatgtgtatgagtaaaacaagtgtgata 13817471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 54 - 238
Target Start/End: Original strand, 13817122 - 13817308
Alignment:
Q  54 aaaatggatgcaagcatgagttattgaaaaatgatgtagaa-tttattcaaaatgtatagagttgtgatatacatgttaaaactgaatatcttgtgaacc 152  Q
    ||||| || ||||||||||||| ||||||| |||| || || |||||||||||||||||||||||| ||||||||||||||  |||||||||||| ||||    
T  13817122 aaaatagaagcaagcatgagttgttgaaaagtgatataaaaatttattcaaaatgtatagagttgtaatatacatgttaaagttgaatatcttgttaacc 13817221  T
Q  153 tacatattaaaatatagtactgatacgtcgactttagctttgataaa--ttttgagatgta-tttttgtatggacatgcaattttgagc 238  Q
    |||  |||||||||||||| ||||| |||  |||||| |||||||||  |||||||||||| ||||||| ||| |||||||||||||||    
T  13817222 tac--attaaaatatagtaatgatatgtcatctttagttttgataaattttttgagatgtattttttgtgtgggcatgcaattttgagc 13817308  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 835 - 1001
Target Start/End: Original strand, 38787055 - 38787219
Alignment:
Q  835 gagcatcaataaatggttcctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagctataagacctatca 934  Q
    ||||||| | || ||||| ||||||| ||| |||| ||| |||||||||||||||| | |||||||||||||||||||||| || ||||  ||||||       
T  38787055 gagcatctaaaagtggtttctgagactttgttaattcacatgcggtgctagcaagatgtgactgttgtatcctggagagtactaactat--gacctactg 38787152  T
Q  935 catcggaaaacttatccaaggtggcgaaatactcttaagcctagtgcattttgcatgcctcagtcaa 1001  Q
    ||||||| ||   ||||| |||| ||||||||||||||| | ||||||||||||| |||||||||||    
T  38787153 catcggataatcaatccagggtgacgaaatactcttaagtccagtgcattttgcacgcctcagtcaa 38787219  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 860 - 929
Target Start/End: Complemental strand, 4648351 - 4648282
Alignment:
Q  860 ccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagctataagacc 929  Q
    |||||||||| || |||| ||| |||||||||| ||||||||||||||| |||||| ||||||| |||||    
T  4648351 ccttgctaattcatgtgcagtgttagcaagaagtgactgttgtatcctgaagagtactagctatgagacc 4648282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 2e-30; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 565 - 673
Target Start/End: Original strand, 27070875 - 27070983
Alignment:
Q  565 atatttcctattcctaagctagccgttttacacatgttgaaatgcttattgaatggcttttacttgtttttagtccaagctttgatttggtctttgtaac 664  Q
    ||||||||||||| | || ||||||||||||||||||||||||| |||| ||||| ||||| |||| ||||| |||||||||||||||||||||| ||||    
T  27070875 atatttcctattcttcagttagccgttttacacatgttgaaatgattatcgaatgactttttcttgcttttaatccaagctttgatttggtctttataac 27070974  T
Q  665 aactatttc 673  Q
    |||||||||    
T  27070975 aactatttc 27070983  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 565 - 673
Target Start/End: Original strand, 27150961 - 27151069
Alignment:
Q  565 atatttcctattcctaagctagccgttttacacatgttgaaatgcttattgaatggcttttacttgtttttagtccaagctttgatttggtctttgtaac 664  Q
    ||||||||||||| | || ||||||||||||||||||||||||| |||| ||||| ||||| |||| ||||| |||||||||||||||||||||| ||||    
T  27150961 atatttcctattcttcagttagccgttttacacatgttgaaatgattatcgaatgactttttcttgcttttaatccaagctttgatttggtctttataac 27151060  T
Q  665 aactatttc 673  Q
    |||||||||    
T  27151061 aactatttc 27151069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 824 - 931
Target Start/End: Original strand, 54572844 - 54572951
Alignment:
Q  824 taagttcccatgagcatcaataaatggttcctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagctat 923  Q
    |||||||||||||||||| |  | | ||||||||||| ||| |||| |||||||||||||||||||| | |||| ||||||| ||||| |||||||||||    
T  54572844 taagttcccatgagcatccaagagtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgacttttgtatcttggagggtattagctat 54572943  T
Q  924 aagaccta 931  Q
     |||||||    
T  54572944 gagaccta 54572951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 419 - 475
Target Start/End: Original strand, 27065929 - 27065985
Alignment:
Q  419 atgagtaaaacaagtttgatagacatgttgtcacctaaaattaatttaagtagactt 475  Q
    |||||| |||||||| | ||||| |||||||||| ||||||||||||||||||||||    
T  27065929 atgagtgaaacaagtgtaatagaaatgttgtcacttaaaattaatttaagtagactt 27065985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 419 - 475
Target Start/End: Original strand, 27087032 - 27087088
Alignment:
Q  419 atgagtaaaacaagtttgatagacatgttgtcacctaaaattaatttaagtagactt 475  Q
    |||||| |||||||| | ||||| |||||||||| ||||||||||||||||||||||    
T  27087032 atgagtgaaacaagtgtaatagaaatgttgtcacttaaaattaatttaagtagactt 27087088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 956 - 1014
Target Start/End: Original strand, 54572963 - 54573021
Alignment:
Q  956 tggcgaaatactcttaagcctagtgcattttgcatgcctcagtcaataatcgataagtt 1014  Q
    ||| |||||||||||||| | ||||| |  |||| ||||||||||||||||||||||||    
T  54572963 tggtgaaatactcttaagtccagtgcttcgtgcacgcctcagtcaataatcgataagtt 54573021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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