View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_low_11 (Length: 477)
Name: NF8349_low_11
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Complemental strand, 34519878 - 34519441
Alignment:
| Q |
18 |
aggaaaatgaatcagtgaggttattgtaatcattacagaacaatcctaacaaacaaaatttcaccaagaataaaatcctaacaaacaaaactctttcata |
117 |
Q |
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| T |
34519878 |
aggaaaatgaatcagcgaggttactgtaatca---cagaacaatcctaacaaacaaaatttcaccaagaataaaatcctaacaaacaaaactctttcata |
34519782 |
T |
|
| Q |
118 |
gtattatgcaaagatgcattcatcacttcttagttacatacatttaatgcatgtttggattgacaaaattccgctatagtaactaaacaggtagtattat |
217 |
Q |
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| T |
34519781 |
gtattatgcaaagatgcattcatcacttcttagttacat----ttaatgcatgtttggattgacaaaattccgctatagtaactaaacaggtagtattat |
34519686 |
T |
|
| Q |
218 |
tgtagatgaaagcatacccttgtgaatctcccttgtgggtccaccaatgccatgagttgaagatcaacatgtccatatcaatccatgccttaccagcatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34519685 |
tgtagatgaaagcatacccttgtgaatctcccttgtgggtccaccaatgccatgagttgaagatcaacatgtccatatcaatccatgccttaccagcatt |
34519586 |
T |
|
| Q |
318 |
tatggagtccagcgtaagcactctaccaacaccttgctgaattatatccaccaaatatggtgtacggtatagttgtatggttactccatagtcctgcgca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34519585 |
tatggagtccagcgtaagcactctaccaacaccttgctgaattatatccaccaaatatggtgtacggtatagttgtatggttactccatagtcctgcgca |
34519486 |
T |
|
| Q |
418 |
atatcatcaagtatcactaacacagtttcatttttgagtggttca |
462 |
Q |
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| T |
34519485 |
atatcatcaaatatcactaacacagtttcatttttgagtggttca |
34519441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 230 - 451
Target Start/End: Complemental strand, 34507576 - 34507355
Alignment:
| Q |
230 |
catacccttgtgaatctcccttgtgggtccaccaatgccatgagttgaagatcaacatgtccatatcaatccatgccttaccagcatttatggagtccag |
329 |
Q |
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| T |
34507576 |
cataccctcgtaaatctccagtgtggatccaccaatgccaggagttgaagatcaacatgtccatgtctacccatgctttaccagcttttatagagtccag |
34507477 |
T |
|
| Q |
330 |
cgtaagcactctaccaacaccttgctgaattatatccaccaaatatggtgtacggtatagttgtatggttactccatagtcctgcgcaatatcatcaagt |
429 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| |
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| T |
34507476 |
ggtaagcactctaccaacatcttcttgaattatatccaccaaatatggtgtacggtatagttgtatggttactccatagttctgcgcaatgtcaccaagt |
34507377 |
T |
|
| Q |
430 |
atcactaacacagtttcatttt |
451 |
Q |
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||||||| |||||||||||||| |
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| T |
34507376 |
atcactaccacagtttcatttt |
34507355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 226 - 414
Target Start/End: Original strand, 4687087 - 4687275
Alignment:
| Q |
226 |
aaagcatacccttgtgaatctcccttgtgggtccaccaatgccatgagttgaagatcaacatgtccatatcaatccatgccttaccagcatttatggagt |
325 |
Q |
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||||||||||| ||||| ||| ||||||||||||||||||||||| ||||| | |||||||||||| | ||||||| |||||||| || |||| |
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| T |
4687087 |
aaagcatacccctgtgatgatcctttgtgggtccaccaatgccatgaattgaaaaccaacatgtccattcctttccatgcattaccagcgacaatagagt |
4687186 |
T |
|
| Q |
326 |
ccagcgtaagcactctaccaacaccttgctgaattatatccaccaaatatggtgtacggtatagttgtatggttactccatagtcctgc |
414 |
Q |
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||| |||||||||| ||||| || ||||||| || |||||||| ||||| ||||| |||||||| |||||||||||||||||| |
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| T |
4687187 |
ccaatgtaagcactcgtccaacgttttctcgaattatgtcgaccaaataaggtgtgcggtaaagttgtatagttactccatagtcctgc |
4687275 |
T |
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