View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_low_12 (Length: 467)
Name: NF8349_low_12
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 38689387 - 38689051
Alignment:
| Q |
18 |
agatgatgatttggttatacctacaggtcgtcttggaggataattgtgaaagatatcccagaatatgttaggccagatcgactaagagagttattttctc |
117 |
Q |
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| T |
38689387 |
agatgatgatttggttatacctacaggtcgtcttggaggataattgtgaaagatatcccagaatatgttaggccagatcgactaagagagttattttctc |
38689288 |
T |
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| Q |
118 |
gtaaaggagaaatcactgatgtcaaacttatgcataacatcaggtacctacctcctcaaatcatacctaaccctagctagctatcccacttttaatttac |
217 |
Q |
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| T |
38689287 |
gtaaaggagaaatcattgatgtcaaacttatgcataacatcaggtacctacctcctcaaatcatacctaaccctagctagctatcccacttttaatttac |
38689188 |
T |
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| Q |
218 |
ttgttttgtgttgataatttcattgtctaaactcagattcagcctatttgctttcattgaatttcgaacggaccatgaagctcaggaacctgttcaatgt |
317 |
Q |
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| T |
38689187 |
ttgttttgtgttgataatttcattgtctaaactcagattcagcctatttgctttcattgaatttggaacggaccatgaagctcaggaagctgttcaatgt |
38689088 |
T |
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| Q |
318 |
ttcaacagaacttacattgacacatctatgattactt |
354 |
Q |
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| T |
38689087 |
ttcaacagaacttacattgacacatctatgattactt |
38689051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 379 - 430
Target Start/End: Complemental strand, 38689056 - 38689005
Alignment:
| Q |
379 |
ttactttcatgtaatgatttaatattttattactcaacttcaaaccactcta |
430 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38689056 |
ttactttcatgtaatgatttaatattttattactcaaactcaaaccactcta |
38689005 |
T |
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